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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NALDL_RAT
Protein type: Transmembrane
Type Confidence: 0.73
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHWAKILGVG IGAAALLGLG IILGHFAIPK ATEPLASSVS DSQDLDLAIL DSVMGQLDAS  60
   61 RIRENLRELS KEPHVATSAR DEALVQLLLG RWKDSASGLD TAKTYEYTVL LSFPSTEQPN 120
  121 SVEVVGPNGT VFHSFQPFEK NLTGEQAEPN VLQPYAAYAP PGTPKGPLVY ANRGSEDDFK 180
  181 KLEAEGINLK GTIALTRYGS VGRGAKAINA ARHGVVGVLV YTDPGDINDG KSLPNETFPN 240
  241 SWGLPPSGVE RGSYYEYFGD PLTPYLPAHP VSFRLDPHNI SGFPPIPTQP IGFEDAKNLL 300
  301 CNLNGTSAPD SWQGALGCEY KLGPGFEPNG NFPAGSEVKV SVYNRLELRN SSNVLGIIQG 360
  361 AVEPDRYVIY GNHRDSWVHG AVDPSSGTAV LLEISRVLGT LLKKGTWRPR RSIIFASWGA 420
  421 EEFGLIGSTE FTEEFLSKLQ ERTVTYINVD ISVFSNATLR AQGTPPVQSV IFSATKEISA 480
  481 PGSSGLSIYD NWIRYTNRSS PVYGLVPSMG TLGAGSDYAS FIHFLGITSM DLAYTYDRSK 540
  541 TSARIYPTYH TAFDTFDYVE KFLDPGFSSH QAVARTAGSV LLRLSDSLFL PLNVSDYSET 600
  601 LQSFLQAAQE NLGALLESHN ISLGPLVTAV EKFKAAAAAL NQHILTLQKS SPDPLQVRMV 660
  661 NDQLMLLERA FLNPRAFPEE RYYSHVLWAP NTASVATFPG LANAYARAQE INSGAEAWAE 720
  721 VERQLSIAVM ALEGAAATLQ PVTDL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle