YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125814602, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	82	0.99
Transmembrane Helix	83	105	0.91
Non-Cytoplasmic	106	113	0.66
Transmembrane Helix	114	131	0.86
Cytoplasmic	132	137	0.69
Transmembrane Helix	138	157	0.87
Non-Cytoplasmic	158	177	0.78
Transmembrane Helix	178	207	0.72
Cytoplasmic	208	209	0.47
Transmembrane Helix	210	233	0.68
Non-Cytoplasmic	234	255	0.59
Transmembrane Helix	256	277	0.85
Cytoplasmic	278	289	0.81
Transmembrane Helix	290	309	0.80
Non-Cytoplasmic	310	344	0.76
Transmembrane Helix	345	365	0.66
Cytoplasmic	366	413	0.38
Transmembrane Helix	414	434	0.94
Non-Cytoplasmic	435	440	0.44
Transmembrane Helix	441	463	0.66
Cytoplasmic	464	470	0.58
Transmembrane Helix	471	499	0.78
Non-Cytoplasmic	500	745	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPFGRHYVV VRPLFSEDSF AEQHERINRK RKTLRHHLKD YFSGVSFSKL CLCCSCDAKR  60
   61 AKNAALSLFP FIGWMKDYKI KEWLLGDIVS GISTGLVAVL QGLAFSLLAS LPPGYGLYTA 120
  121 FFPAIIYFFL GTSRHLSVGA FPILSLMVGA VVTRLVPDEG PSFNITGFEG LSLEQQRVLV 180
  181 ASSVTFLMGA FQLVMGLLQV GFIVMYLSET LVSGFTTAAA VHILVSQLRF VLGLDFPGIN 240
  241 GPLAIIYTLV EVFSRITSTN VADLVTSIAI MALVLIVKEI NDRFKSKLPV PIPIEVIMTV 300
  301 IACGVSYAFN FEERFDVVIV GEMVNGYESP VAPNLEVIEE TAVEAFPMAI VGFAVAFSVA 360
  361 KVYSVKHDYT IDGNQELIAF GVSNMFGASF RSFAASTALS RTAIQESTGG KTQIAGILSA 420
  421 MMVLIVIVGV GFLLEPLPRS VLGALVIVNL KGMLMQFSEL PFLWRNDRPD FVTWMVTFMA 480
  481 SLFLGLDLGL AVGIGAELFT VVYRTQFPRC SVLANISGTD LYRDRKDYTS IYEPDGVKIF 540
  541 KIPSPIFFAN IDFFRDKLVQ EVGFNPMRVL KKRNKALRKI RKMLCNGELE VSDRGPVLRQ 600
  601 PSVDTSEGSM EDLDQPIDFS DLPIQVNWNS QLPANISVPP VNIHSLILDF CAVSFIDVSA 660
  661 LKGLKATLKE FIRIEVDVYI VSCDVYIMEK LQHCTFFDDE IKTSIFYPTL HDAMLHILET 720
  721 HPDHGELEKD ININYEVIQR DSLTV