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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ACHA2_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLSHSALQF WTHLYLWCLL LVPAVLTQQG SHTHAEDRLF KHLFGGYNRW ARPVPNTSDV  60
   61 VIVRFGLSIA QLIDVDEKNQ MMTTNVWLKQ EWNDYKLRWD PAEFGNVTSL RVPSEMIWIP 120
  121 DIVLYNNADG EFAVTHMTKA HLFFTGTVHW VPPAIYKSSC SIDVTFFPFD QQNCKMKFGS 180
  181 WTYDKAKIDL EQMERTVDLK DYWESGEWAI INATGTYNSK KYDCCAEIYP DVTYYFVIRR 240
  241 LPLFYTINLI IPCLLISCLT VLVFYLPSEC GEKITLCISV LLSLTVFLLL ITEIIPSTSL 300
  301 VIPLIGEYLL FTMIFVTLSI VITVFVLNVH HRSPSTHNMP NWVRVALLGR VPRWLMMNRP 360
  361 LPPMELHGSP DLKLSPSYHW LETNMDAGER EETEEEEEEE DENICVCAGL PDSSMGVLYG 420
  421 HGGLHLRAME PETKTPSQAS EILLSPQIQK ALEGVHYIAD RLRSEDADSS VKEDWKYVAM 480
  481 VVDRIFLWLF IIVCFLGTIG LFLPPFLAGM I

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle