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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|6978703, gi|3...
Protein type: Transmembrane
Type Confidence: 0.85
Topology Confidence: 0.38
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEAHQAVAF QFTVTPDGVD FRLSREALRH IYLSGINSWK KRLIRIKNGI LRGVYPGSPT  60
   61 SWLVVVMATV GSNYCKVDIS MGLVHCIQRC LPTRYGSYGT PQTETLLSMV IFSTGVWATG 120
  121 IFLFRQTLKL LLSYHGWMFE MHSKTSHATK IWAICVRLLS SRRPMLYSFQ TSLPKLPVPS 180
  181 VPATIHRYLD SVRPLLDDEA YFRMESLAKE FQDKIAPRLQ KYLVLKSWWA TNYVSDWWEE 240
  241 YVYLRGRSPI MVDSNYYAMD FVLIKNTSQQ AARLGNTVHA MIMYRRKLDR EEIKPVMALG 300
  301 MVPMCSYQME RMFNTTRIPG KETDLLQHLS ESRHVAVYHK GRFFKVWLYE GSCLLKPRDL 360
  361 EMQFQRILDD TSPPQPGEEK LAALTAGGRV EWAEARQKFF SSGKNKMSLD TIERAAFFVA 420
  421 LDEDSHCYNP DDEASLSLYG KSLLHGNCYN RWFDKSFTLI SCKNGQLGLN TEHSWADAPI 480
  481 IGHLWEFVLA TDTFHLGYTE TGHCVGEPNT KLPPPQRMQW DIPEQCQTAI ENSYQVAKAL 540
  541 ADDVELYCFQ FLPFGKGLIK KCRTSPDAFV QIALQLAHFR DKGKFCLTYE ASMTRMFREG 600
  601 RTETVRSCTS ESTAFVRAMM TGSHKEQDLQ DLFRKASEKH QNMYRLAMTG AGIDRHLFCL 660
  661 YIVSKYLGVR SPFLDEVLSE PWSLSTSQIP QFQICMFDPK QYPNHLGAGG GFGPVADHGY 720
  721 GVSYMIAGEN TMFFHVSSKL SSSETNALRF GNHIRQALLD IADLFKISKT DS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle