YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DHI2_RAT
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERWPWPSGG AWLLVAARAL LQLLRSDLRL GRPLLAALAL LAALDWLCQR LLPPPAALVV  60
   61 LAGAGWIALS RLARPPRLPV ATRAVLITGC DTGFGKETAK KLDAMGFTVL ATVLDLNGPG 120
  121 ALELRARCSP RLKLLQMDLT KPEDISRVLE ITKAHTASTG LWGLVNNAGL NMVVADVELS 180
  181 PVVTFRECME VNFFGALELT KGLLPLLRHS RGRIVTVGSP AGDMPYPCLA AYGTSKAAIA 240
  241 LLMDTFSCEL LPWGIKVSII QPGCFKTEAV TNVNLWEKRK QLLLANLPRE LLQAYGEDYI 300
  301 EHLHGQFLNS LRMALPDLSP VVDAIIDALL AAQPRSRYYT GRGLGLMYFI HHYLPGGLRR 360
  361 RFLQNFFISH LLPRALRPGQ PGPVHDTTQD PNPSPTVSAL

Type	Start	End	Confidence
Cytoplasmic	1	27	0.42
Transmembrane Helix	28	47	0.49
Non-Cytoplasmic	48	400	0.52