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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: EPCAM_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.95
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPPKALAFG LLLAVVTATL AAAQKDCVCN NYKLTSRCYE NENGECQCTS YGTQNTVICS  60
   61 KLASKCLVMK AEMTHSKSGR RMKPEGAIQN NDGLYDPECD EQGLFKAKQC NGTATCWCVN 120
  121 TAGVRRTDKD TEITCSERVR TYWIIIELKH KERAQPYNFE SLHTALQDTF ASRYMLNPKF 180
  181 IKSIMYENNV ITIDLMQNSS QKTQDDVDIA DVAYYFEKDV KGESLFHSSK SMDLRVNGEL 240
  241 LDLDPGQTLI YYVDEKAPEF SMQGLTAGII AVIVVVVLAV IAGIVVLVIS TRKRSAKYEK 300
  301 AEIKEMGEIH RELNA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle