YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	V1BR_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSEPSWTAT PSPGGTLPVP NATTPWLGRD EELAKVEIGI LATVLVLATG GNLAVLLTLG  60
   61 RHGHKRSRMH LFVLHLALTD LGVALFQVLP QLLWDITYRF QGSDLLCRAV KYLQVLSMFA 120
  121 STYMLLAMTL DRYLAVCHPL RSLRQPSQST YPLIAAPWLL AAILSLPQVF IFSLREVIQG 180
  181 SGVLDCWADF YFSWGPRAYI TWTTMAIFVL PVAVLSACYG LICHEIYKNL KVKTQAGREE 240
  241 RRGWRTWDKS SSSAVATAAT RGLPSRVSSI STISRAKIRT VKMTFVIVLA YIACWAPFFS 300
  301 VQMWSVWDEN APNEDSTNVA FTISMLLGNL SSCCNPWIYM GFNSRLLPRS LSHHACCTGS 360
  361 KPQVHRQLST SSLTSRRTTL LTHACGSPTL RLSLNLSLRA KPRPAGSLKD LEQVDGEATM 420
  421 ETSIF

Type	Start	End	Confidence
Non-Cytoplasmic	1	37	0.82
Transmembrane Helix	38	60	0.85
Cytoplasmic	61	70	0.89
Transmembrane Helix	71	90	0.95
Non-Cytoplasmic	91	111	0.85
Transmembrane Helix	112	134	0.84
Cytoplasmic	135	150	0.89
Transmembrane Helix	151	172	0.91
Non-Cytoplasmic	173	199	0.93
Transmembrane Helix	200	223	0.93
Cytoplasmic	224	280	0.98
Transmembrane Helix	281	301	0.90
Non-Cytoplasmic	302	318	0.88
Transmembrane Helix	319	339	0.94
Cytoplasmic	340	425	0.96