YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAC1D_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	126	0.98
Transmembrane Helix	127	149	0.89
Non-Cytoplasmic	150	165	0.94
Transmembrane Helix	166	187	0.89
Cytoplasmic	188	196	0.79
Transmembrane Helix	197	217	0.86
Non-Cytoplasmic	218	270	0.85
Transmembrane Helix	271	290	0.94
Cytoplasmic	291	343	0.93
Transmembrane Helix	344	366	0.81
Non-Cytoplasmic	367	382	0.88
Transmembrane Helix	383	405	0.92
Cytoplasmic	406	581	0.98
Transmembrane Helix	582	599	0.96
Non-Cytoplasmic	600	648	0.64
Transmembrane Helix	649	664	0.33
Cytoplasmic	665	708	0.70
Transmembrane Helix	709	731	0.87
Non-Cytoplasmic	732	779	0.86
Transmembrane Helix	780	803	0.83
Cytoplasmic	804	944	0.95
Transmembrane Helix	945	964	0.85
Non-Cytoplasmic	965	982	0.69
Transmembrane Helix	983	1004	0.66
Cytoplasmic	1005	1013	0.48
Transmembrane Helix	1014	1039	0.75
Non-Cytoplasmic	1040	1061	0.51
Transmembrane Helix	1062	1076	0.52
Cytoplasmic	1077	1077	0.02
Transmembrane Helix	1078	1092	0.77
Non-Cytoplasmic	1093	1145	0.46
Transmembrane Helix	1146	1166	0.69
Cytoplasmic	1167	1186	0.60
Transmembrane Helix	1187	1212	0.85
Non-Cytoplasmic	1213	1264	0.64
Transmembrane Helix	1265	1286	0.82
Cytoplasmic	1287	1297	0.61
Transmembrane Helix	1298	1318	0.85
Non-Cytoplasmic	1319	1392	0.72
Transmembrane Helix	1393	1412	0.95
Cytoplasmic	1413	1484	0.85
Transmembrane Helix	1485	1508	0.88
Non-Cytoplasmic	1509	2203	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMMMMMKKM QHQRQQQEDH ANEANYARGT RLPISGEGPT SQPNSSKQTV LSWQAAIDAA  60
   61 RQAKAAQTMS TSAPPPVGSL SQRKRQQYAK SKKQGNSSNS RPARALFCLS LNNPIRRACI 120
  121 SIVDWKPFDI FILLAIFANC VALAIYIPFP EDDSNSTNHN LEKVEYAFLI IFTVETFLKI 180
  181 IASGLLLHPN ASVRNGWNLL DFVIVIVGLF SVILEQLTKE TEGGNHSSGK SGGFDVKALR 240
  241 AFRVLRPLRL VSGVPSLQVV LNSIIKAMVP LLHIALLVLF VIIIYAIIGL ELFIGKMHKT 300
  301 CFFADSDIVA EEDPAPCAFS GNGRQCAANG TECRSGWVGP NGGITNFDNF AFAMLTVFQC 360
  361 ITMEGWTDVL YWVNDAIGWE WPWVYFVSLI ILGSFFVLNL VLGVLSGEFS KEREKAKARG 420
  421 DFQKLREKQQ LEEDLKGYLD WITQAEDIDP ENEEEGGEEG KRNTSMPTSE TESVNTENVS 480
  481 GEGETQGCCG SLWCWWKRRG AAKTGPSGCR RWGQAISKSK LRSHGAREAL CVCRCSLESL 540
  541 VKLWTSRFSA HLQAAYVRPY SRRWRRWNRF NRRRCRAAVK SVTFYWLVIV LVFLNTLTIS 600
  601 SEHYNQPDWL TQIQDIANKV LLALFTCEML VKMYSLGLQA YFVSLFNRFD CFVVCGGITE 660
  661 TILVELELMS PLGVSVFRCV RLLRIFKVTR HWTSLSNLVA SLLNSMKSIA SLLLLLFLFI 720
  721 IIFSLLGMQL FGGKFNFDET QTKRSTFDNF PQALLTVFQI LTGEDWNAVM YDGIMAYGGP 780
  781 SSSGMIVCIY FIILFICGNY ILLKLFLAIA VDNLADAESL NTAQKEEAEE KERKKIARKE 840
  841 SLENKKNNKP EVNQIANSDN KVTIDDYQEE AEDKDPYPPC DVPVGEEEEE EEEDEPEVPA 900
  901 GPRPRRISEL NMKEKIAPIP EGSAFFILSK TNPIRVGCHK LINHHIFTNL ILVFIMLSSA 960
  961 ALAAEDPIRS HSFRNTILGY FDYAFTAIFT VEILLKMTTF GAFLHKGAFC RNYFNLLDML1020
 1021 VVGVSLVSFG IQSSAISVVK ILRVLRVLRP LRAINRAKGL KHVVQCVFVA IRTIGNIMIV1080
 1081 TTLLQFMFAC IGVQLFKGKF YRCTDEAKSN PEECRGLFIL YKDGDVDSPV VRERIWQNSD1140
 1141 FNFDNVLSAM MALFTVSTFE GWPALLYKAI DSNGENVGPV YNYRVEISIF FIIYIIIVAF1200
 1201 FMMNIFVGFV IVTFQEQGEK EYKNCELDKN QRQCVEYALK ARPLRRYIPK NPYQYKFWYV1260
 1261 VNSSPFEYMM FVLIMLNTLC LAMQHYEQSK MFNDAMDILN MVFTGVFTVE MVLKVIAFKP1320
 1321 KGYFSDAWNT FDSLIVIGSI IDVALSEADN SEESNRISIT FFRLFRVMRL VKLLSRGEGI1380
 1381 RTLLWTFIKS FQALPYVALL IAMLFFIYAV IGMQMFGKVA MRDNNQINRN NNFQTFPQAV1440
 1441 LLLFRCATGE AWQEIMLACL PGKLCDPDSD YNPGEEYTCG SNFAIVYFIS FYMLCAFLII1500
 1501 NLFVAVIMDN FDYLTRDWSI LGPHHLDEFK RIWSEYDPEA KGRIKHLDVV TLLRRIQPPL1560
 1561 GFGKLCPHRV ACKRLVAMNM PLNSDGTVMF NATLFALVRT ALKIKTEGNL EQANEELRAV1620
 1621 IKKIWKKTSM KLLDQVVPPA GDDEVTVGKF YATFLIQDYF RKFKKRKEQG LVGKYPAKNT1680
 1681 TIALQAGLRT LHDIGPEIRR AISCDLQDDE PEDSKPEEED VFKRNGALLG NYVNHVNSDR1740
 1741 RESLQQTNTT HRPLHVQRPS IPPASDTEKP LFPPAGNSVC HNHHNHNSIG KQVPTSTNAN1800
 1801 LNNANMSKAA HGKRPSIGDL EHVSENGHYS YKHDRELQRR SSIKRTRYYE TYIRSESGDE1860
 1861 QLPTIFREDP EIHGYFRDPR CFGEQEYFSS EECCEDDSSP TWSRQNYSYY NRYPGSSMDF1920
 1921 ERPRGYHHPQ GFLEDDDSPI GYDSRRSPRR RLLPPTPPSH RRSSFNFECL RRQNSQDDVL1980
 1981 PSPALPHRAA LPLHLMQQQI MAVAGLDSSK AQKYSPSHST RSWATPPATP PYRDWTPCYT2040
 2041 PLIQVDRSES MDQVNGSLPS LHRSSWYTDE PDISYRTFTP ASLTVPSSFR NKNSDKQRSA2100
 2101 DSLVEAVLIS EGLGRYARDP KFVSATKHEI ADACDLTIDE MESAASTLLN GSVCPRANGD2160
 2161 MGPISHRQDY ELQDFGPGYS DEEPDPGREE EDLADEMICI TTL