YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46237539, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLPLLVVV ALGLATVVVS AGPQTIECWF VEDAGGGGLS KKPATLLLRH GPRGPPPRPD  60
   61 LDPKLYFKVD DPAGMLLAAF RRYPAGAHAP HCEMSSYIPF PASAKWARGL SPQQNCSRAL 120
  121 DGDWLMVSVS GTVFSLSSLL RPLPEPQREP VFITMATVVL TVLTRHPAPR IHLGKDAVLD 180
  181 LRFAYAPPAL EDAPSVASGP PPFGLEWRRQ HRGKGHLLLA AIPGLLEKMP PAREKAVAFA 240
  241 AWDDDNDPWG PWTGNGTLWL PAVSPSQEGV YLATVHLPYL QGQVSLELTV HKPPRVSLTP 300
  301 APIVWAAPGE APPELLCLVS HFYPEEGLEV EWELRGGPEG SSRKAEGKTW VSTVRHHSDG 360
  361 SVSQSGHLQL PPVTDKQHGV RYACRVRHPS LPSSGRSAEV TLEVAGFSGP SIEDGIGLFL 420
  421 SAFLLLGLFK ALGWMAAYLT IPKILKEKAS ATSLTVPKDE KKSE

Type	Start	End	Confidence
Signal Peptide	1	21	0.99
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	415	0.99
Transmembrane Helix	416	438	0.83
Cytoplasmic	439	464	0.88