YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VIPR2_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.92
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	126	0.97
Transmembrane Helix	127	150	0.88
Cytoplasmic	151	158	0.87
Transmembrane Helix	159	177	0.90
Non-Cytoplasmic	178	205	0.85
Transmembrane Helix	206	229	0.77
Cytoplasmic	230	239	0.80
Transmembrane Helix	240	261	0.94
Non-Cytoplasmic	262	281	0.92
Transmembrane Helix	282	305	0.87
Cytoplasmic	306	328	0.92
Transmembrane Helix	329	350	0.90
Non-Cytoplasmic	351	355	0.86
Transmembrane Helix	356	378	0.90
Cytoplasmic	379	437	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRASVVLTCY CWLLVRVSSI HPECRFHLEI QEEETKCAEL LSSQMENHRA CSGVWDNITC  60
   61 WRPADIGETV TVPCPKVFSN FYSRPGNISK NCTSDGWSET FPDFIDACGY NDPEDESKIT 120
  121 FYILVKAIYT LGYSVSLMSL TTGSIIICLF RKLHCTRNYI HLNLFLSFML RAISVLVKDS 180
  181 VLYSSSGTLR CHDQPGSWVG CKLSLVFFQY CIMANFYWLL VEGLYLHTLL VAILPPSRCF 240
  241 LAYLLIGWGI PSVCIGAWIA TRLSLEDTGC WDTNDHSIPW WVIRMPILIS IVVNFALFIS 300
  301 IVRILLQKLT SPDVGGNDQS QYKRLAKSTL LLIPLFGVHY MVFAAFPIGI SSTYQILFEL 360
  361 CVGSFQGLVV AVLYCFLNSE VQCELKRRWR GLCLTQPGSR DYRLHSWSMS RNGSESALQI 420
  421 HRGSRTQSFL QSETSVI