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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ATRN_RAT
Protein type: Transmembrane
Type Confidence: 0.94
Topology Confidence: 0.95
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAAAAAAEA TEARLRGYTT ATAAPAGWKE RQHRPCAATG AWRPWPRAGL CLPRVLSRAL  60
   61 SPPPLLPLLP LLFSLLLLPL PREAEAAAVA AAVSGSAAAE AKECDRPCVN GGRCNPGTGQ 120
  121 CVCPTGWVGE QCQHCGGRFR LTGSSGFVTD GPGNYKYKTK CTWLIEGQPN KIMRLRFNHF 180
  181 ATECSWDHLY VYDGDSIYAP LIAAFSGLIV PERDGNETAP EVTVTSGYAL LHFFSDAAYN 240
  241 LTGFNITYNF DMCPNNCSGR GECKSSNSSS TVECECSENW KGESCDIPHC TDNCGFPHRG 300
  301 ICNASDTRGC SCFPHWQGPG CSIPVPANQS FWTREEYSDL KLPRASHKAV VNGNIMWVVG 360
  361 GYMFNHSDYS MVLAYDLASR EWLSLNHSVN SVVVRYGHSL ALHKDKIYMY GGKIDSTGNV 420
  421 TNELRVFHIH NESWVLLTPK AKDQYAVVGH SAHIVTLSSG RVVMLVIFGH CPLYGYISVV 480
  481 QEYDLEKNTW SILQTQGALV QGGYGHSSVY DHRTKALYVH GGYKAFSANK YRLADDLYRY 540
  541 HVDTQMWTIL KDSRFFRYLH TAVIVSGTML VFGGNTHNDT SMSHGAKCFS SDFMAYDIAC 600
  601 DRWSVLPRPE LHHDVNRFGH SAVLHNSTMY VFGGFNSLLL SDVLVFTSEQ CDAHRSEAAC 660
  661 VAAGPGIRCL WDTQSSRCTS WELATEEQAE KLKSECFSKR TLDHDRCDQH TDCYSCTANT 720
  721 NDCHWCNDHC VPVNHSCTEG QISIAKYDNC PKDNPMYYCN KKTSCRSCAL DQNCQWEPRN 780
  781 QECIALPENI CGIGWHLVGN SCLKITTAKE NYDNAKLSCR NHNAFLASLT SQKKVEFVLK 840
  841 QLRLMQSSQS TSKLTLTPWV GLRKINVSYW CWEDMSPFTN SLLQWMPSEP SDAGFCGILS 900
  901 EPSTRGLKAA TCINPLNGSV CERPANHSAK QCRTPCALRT ACGECTSSSS ECMWCSNMKQ 960
  961 CVDSNAYVAS FPFGQCMEWY TMSSCPPENC SGYCTCSHCL EQPGCGWCTD PSNTGKGKCI1020
 1021 EGSYKGPVKM PSHASTGNVY PQPLLNSSMC LEDSRYNWSF IHCPACQCNG HSKCINQSIC1080
 1081 EKCEDLTTGK HCETCISGFY GDPTNGGKCQ PCKCNGHASL CNTNTGKCFC TTKGVKGEEC1140
 1141 QLCEVENRYQ GNPLKGTCYY TLLIDYQFTF SLSQEDDRYY TAINFVATPD EQNRDLDMFI1200
 1201 NASKNFNLNI TWATSFPAGT QTGEEVPVVS KTNIKEYKDS FSNEKFDFRN HPNITFFVYV1260
 1261 SNFTWPIKIQ IAFSQHSNFM DLVQFFVTFF SCFLSLLLVA AVVWKIKQSC WASRRREQLL1320
 1321 REMQQMASRP FASVNVALET DEEPPDLIGG SIKTVPKPIA LEPCFGNKAA VLSVFVRLPR1380
 1381 GLGGIPPPGQ SGLAVASALV DISQQMPIVY KEKSGAVRNR KQQPPAQPGT CI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle