YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	5HT1A_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVFSFGQGN NTTASQEPFG TGGNVTSISD VTFSYQVITS LLLGTLIFCA VLGNACVVAA  60
   61 IALERSLQNV ANYLIGSLAV TDLMVSVLVL PMAALYQVLN KWTLGQVTCD LFIALDVLCC 120
  121 TSSILHLCAI ALDRYWAITD PIDYVNKRTP RRAAALISLT WLIGFLISIP PMLGWRTPED 180
  181 RSDPDACTIS KDHGYTIYST FGAFYIPLLL MLVLYGRIFR AARFRIRKTV RKVEKKGAGT 240
  241 SLGTSSAPPP KKSLNGQPGS GDWRRCAENR AVGTPCTNGA VRQGDDEATL EVIEVHRVGN 300
  301 SKEHLPLPSE SGSNSYAPAC LERKNERNAE AKRKMALARE RKTVKTLGII MGTFILCWLP 360
  361 FFIVALVLPF CESSCHMPAL LGAIINWLGY SNSLLNPVIY AYFNKDFQNA FKKIIKCKFC 420
  421 RR

Type	Start	End	Confidence
Non-Cytoplasmic	1	40	0.89
Transmembrane Helix	41	63	0.90
Cytoplasmic	64	72	0.82
Transmembrane Helix	73	95	0.91
Non-Cytoplasmic	96	111	0.84
Transmembrane Helix	112	132	0.92
Cytoplasmic	133	152	0.90
Transmembrane Helix	153	174	0.90
Non-Cytoplasmic	175	197	0.93
Transmembrane Helix	198	219	0.89
Cytoplasmic	220	342	0.99
Transmembrane Helix	343	368	0.85
Non-Cytoplasmic	369	382	0.74
Transmembrane Helix	383	403	0.81
Cytoplasmic	404	422	0.89