YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S13A5_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.69
Transmembrane Helix	11	31	0.91
Non-Cytoplasmic	32	44	0.54
Transmembrane Helix	45	67	0.86
Cytoplasmic	68	81	0.56
Transmembrane Helix	82	100	0.75
Non-Cytoplasmic	101	123	0.60
Transmembrane Helix	124	145	0.82
Cytoplasmic	146	212	0.80
Transmembrane Helix	213	235	0.80
Non-Cytoplasmic	236	255	0.89
Transmembrane Helix	256	276	0.95
Cytoplasmic	277	315	0.94
Transmembrane Helix	316	336	0.91
Non-Cytoplasmic	337	356	0.91
Transmembrane Helix	357	375	0.93
Cytoplasmic	376	409	0.93
Transmembrane Helix	410	428	0.64
Non-Cytoplasmic	429	448	0.54
Transmembrane Helix	449	477	0.75
Cytoplasmic	478	488	0.46
Transmembrane Helix	489	512	0.81
Non-Cytoplasmic	513	531	0.52
Transmembrane Helix	532	552	0.89
Cytoplasmic	553	572	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAKTYVTK FKSFVILFFA PILLLPLIIL VPDKFARCAY VIILMAIYWC TDVIPVAITS  60
   61 LLPVLLFPLL KVLDSKQVCV QYMTDTNMLF LGSLIVATAV ERWELHKRIA LRMLLFVGTK 120
  121 PSRLMLGFMF VTAFLSMWIS NTATTAMMIP IVEAMLEQMV ATNVAVDASQ RTMELLDKNK 180
  181 ASELPGSQVV FEDPSVQKQE DEETKNMYKA MNLCVCYAAS IGGTATLTGT GPNVVLLGQM 240
  241 QELFPDSKDV MNFASWFAFA LPNMLLMLVM AWLWLLCFYM RPNLKKTCIC CGRKKKDTEK 300
  301 IASKVLYEEY RKLGPLSYAE CNVLFCFGLL IILWFSRDPG FMPGWLSIAW IEGNTKHVTD 360
  361 ATVAIFVAIL LFIVPSQKPK FNFSRQTEEE RKTPFYPPPL LNWKVTQEKV PWGIVLLLGG 420
  421 GFAMAKGCET SGLSEWMARQ MEPLSSVRPA IITLILSCIV AMTTECTSNV ATTTLFLPIF 480
  481 ASMARSIGIH PLYVMIPCTL SASLAFMLPV ATPPNAIVFA YGHLKVIDMV KTGLVMNILG 540
  541 IASVFLSVNT WGRAVFNLDK FPDWANLTHI NT