YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	K1C9_RAT
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFRQISSSF RSSSGSSCGG GGGRGASRGS MRSSFGRSSR AGGESRFGSS SGFGGGGFSA  60
   61 CGTGGGGSFG SSYGGGYGRG FSAGSSSGMF GGSSRGCFGG GSGGGFGGGS GGGFGGGFGG 120
  121 GFGGGSGGGE GSILNTNEKV VMQNLNSRLA SYMDKVQELE EDNANLEKQI QEWYSRKGNR 180
  181 VFQKDYSHYY NTIEDLKDRI VDLTARNNKA LIDMDNTRMT LGDFRVKLEM EQSLPQGVDA 240
  241 DINGLQKVLD DINMEKSDLE IQFDSLDDEL KALKKSHKEE MNQLTGLNDG DVNVEINVAP 300
  301 STDLTQVLND MREEYEHLIS KNRQDIEQHY ESQMTQIEHQ LTNSGPEMET NMKQVSQLQH 360
  361 SVQELNIELQ TQLTTKSALE KALEDTKNRY CGQLQQIREQ ISEMEAQLAQ VRAETECQNQ 420
  421 EYGLLLSIKT RLEKEIETYR KLLEGGQQDF ESSGAGQIGF GSGKGGQRGS GGSYGGGSGD 480
  481 SYEGESGGSY GGGSGGSHGG KSGGSYGGGS SSGGGSGGSY GGGSGGSHGG KSGGSHGGGS 540
  541 GGSYGGGSGS GGESGGSYGG GSGGSHGGQK GGSGGSYEGG SGGSYGGGSG SGGGSGGSYG 600
  601 GGNTRPSQSQ SSQIPRLR

Type	Start	End	Confidence
Cytoplasmic	1	46	0.66
Transmembrane Helix	47	69	0.69
Non-Cytoplasmic	70	79	0.62
Transmembrane Helix	80	99	0.47
Cytoplasmic	100	103	0.42
Transmembrane Helix	104	125	0.68
Non-Cytoplasmic	126	618	0.82