YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CXCR4_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIYTSDNYS EEVGSGDYDS NKEPCFRDEN ENFNRIFLPT IYFIIFLTGI VGNGLVILVM  60
   61 GYQKKLRSMT DKYRLHLSVA DLLFVITLPF WAVDAMADWY FGKFLCKAVH IIYTVNLYSS 120
  121 VLILAFISLD RYLAIVHATN SQSARKLLAE KAVYVGVWIP ALLLTIPDII FADVSQGDGR 180
  181 YICDRLYPDS LWMVVFQFQH IMVGLILPGI VILSCYCIII SKLSHSKGHQ KRKALKTTVI 240
  241 LILAFFACWL PYYVGISIDS FILLEVIKQG CEFESVVHKW ISITEALAFF HCCLNPILYA 300
  301 FLGAKFKSSA QHALNSMSRG SSLKILSKGK RGGHSSVSTE SESSSFHSS

Type	Start	End	Confidence
Non-Cytoplasmic	1	39	0.98
Transmembrane Helix	40	62	0.92
Cytoplasmic	63	72	0.96
Transmembrane Helix	73	93	0.88
Non-Cytoplasmic	94	109	0.82
Transmembrane Helix	110	133	0.85
Cytoplasmic	134	151	0.89
Transmembrane Helix	152	172	0.91
Non-Cytoplasmic	173	197	0.96
Transmembrane Helix	198	220	0.92
Cytoplasmic	221	233	0.93
Transmembrane Helix	234	256	0.87
Non-Cytoplasmic	257	285	0.88
Transmembrane Helix	286	303	0.83
Cytoplasmic	304	349	0.85