YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HRH3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERAPPDGLM NASGTLAGEA AAAGGARGFS AAWTAVLAAL MALLIVATVL GNALVMLAFV  60
   61 ADSSLRTQNN FFLLNLAISD FLVGAFCIPL YVPYVLTGRW TFGRGLCKLW LVVDYLLCAS 120
  121 SVFNIVLISY DRFLSVTRAV SYRAQQGDTR RAVRKMALVW VLAFLLYGPA ILSWEYLSGG 180
  181 SSIPEGHCYA EFFYNWYFLI TASTLEFFTP FLSVTFFNLS IYLNIQRRTR LRLDGGREAG 240
  241 PEPPPDAQPS PPPAPPSCWG CWPKGHGEAM PLHRYGVGEA GPGVEAGEAA LGGGSGGGAA 300
  301 ASPTSSSGSS SRGTERPRSL KRGSKPSASS ASLEKRMKMV SQSITQRFRL SRDKKVAKSL 360
  361 AIIVSIFGLC WAPYTLLMII RAACHGRCIP DYWYETSFWL LWANSAVNPV LYPLCHYSFR 420
  421 RAFTKLLCPQ KLKVQPHGSL EQCWK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.70
Transmembrane Helix	9	29	0.67
Non-Cytoplasmic	30	36	0.64
Transmembrane Helix	37	60	0.90
Cytoplasmic	61	70	0.90
Transmembrane Helix	71	92	0.94
Non-Cytoplasmic	93	110	0.84
Transmembrane Helix	111	134	0.85
Cytoplasmic	135	155	0.91
Transmembrane Helix	156	174	0.93
Non-Cytoplasmic	175	198	0.89
Transmembrane Helix	199	222	0.90
Cytoplasmic	223	355	0.99
Transmembrane Helix	356	380	0.85
Non-Cytoplasmic	381	397	0.89
Transmembrane Helix	398	417	0.89
Cytoplasmic	418	445	0.92