YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIGU_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	17	0.98
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	134	0.73
Transmembrane Helix	135	156	0.43
Cytoplasmic	157	165	0.52
Transmembrane Helix	166	188	0.73
Non-Cytoplasmic	189	192	0.47
Transmembrane Helix	193	208	0.84
Cytoplasmic	209	228	0.75
Transmembrane Helix	229	249	0.94
Non-Cytoplasmic	250	255	0.70
Transmembrane Helix	256	278	0.70
Cytoplasmic	279	284	0.60
Transmembrane Helix	285	306	0.89
Non-Cytoplasmic	307	312	0.58
Transmembrane Helix	313	342	0.68
Cytoplasmic	343	354	0.57
Transmembrane Helix	355	377	0.92
Non-Cytoplasmic	378	385	0.71
Transmembrane Helix	386	408	0.89
Cytoplasmic	409	435	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPLALVLV VAVTVRAALF RSSLAEFISE RVEVVSPLSS WKRVVEGLAL LDLGVSPYSG  60
   61 AVFHETPLII YLFHFLIDYA ELVFMITDAL TAIALYFAIQ DFNKVVFKKQ KLLLELDQYA 120
  121 PDVAELIRTP MEMRYIPLKV ALFYLLNPYT ILSCVAKSTC AINNTLIAFF ILTTIKGSVF 180
  181 LSAIFLALAT YQSLYPITLF APGLLYLLQR QYIPVKVKSK AFWIFSWEYA MMYTGSLVVI 240
  241 VCLSFFLLSS WDFIPAVYGF ILSVPDLTPN IGLFWYFFAE MFEHFSLFFV CVFQINVFFY 300
  301 TVPLAIKLKE HPIFFMFIQI AIISIFKSYP TVGDVALYMA FFPVWSHLYR FLRNIFVLTC 360
  361 IIIVCSLLFP VLWHLWIYAG SANSNFFYAI TLTFNVGQIL LISDYFYAFL RREYYLTHGL 420
  421 YLTAKDGTEA MLVLK