YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GBRG2_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.75
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSPNTWSTG STVYSPVFSQ KMTLWILLLL SLYPGFTSQK SDDDYEDYAS NKTWVLTPKV  60
   61 PEGDVTVILN NLLEGYDNKL RPDIGVKPTL IHTDMYVNSI GPVNAINMEY TIDIFFAQTW 120
  121 YDRRLKFNST IKVLRLNSNM VGKIWIPDTF FRNSKKADAH WITTPNRMLR IWNDGRVLYT 180
  181 LRLTIDAECQ LQLHNFPMDE HSCPLEFSSY GYPREEIVYQ WKRSSVEVGD TRSWRLYQFS 240
  241 FVGLRNTTEV VKTTSGDYVV MSVYFDLSRR MGYFTIQTYI PCTLIVVLSW VSFWINKDAV 300
  301 PARTSLGITT VLTMTTLSTI ARKSLPKVSY VTAMDLFVSV CFIFVFSALV EYGTLHYFVS 360
  361 NRKPSKDKDK KKKNPAPTID IRPRSATIQM NNATHLQERD EEYGYECLDG KDCASFFCCF 420
  421 EDCRTGAWRH GRIHIRIAKM DSYARIFFPT AFCLFNLVYW VSYLYL

Type	Start	End	Confidence
Signal Peptide	1	37	0.73
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	272	0.89
Transmembrane Helix	273	294	0.90
Cytoplasmic	295	303	0.69
Transmembrane Helix	304	321	0.88
Non-Cytoplasmic	322	332	0.73
Transmembrane Helix	333	355	0.86
Cytoplasmic	356	441	0.93
Transmembrane Helix	442	463	0.90
Non-Cytoplasmic	464	466	0.83