YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GBRP_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.87
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYSLYLAFV CLNLLAQRMC IQGNQFNVEV SRSDKLSLPG FENLTAGYNK FLRPNFGGDP  60
   61 VRIALTLDIA SISSISESNM DYTATIYLRQ RWTDPRLVFE GNKSFTLDAR LVEFLWVPDT 120
  121 YIVESKKSFL HEVTVGNRLI RLFSNGTVLY ALRITTTVTC NMDLSKYPMD TQTCKLQLES 180
  181 WGYDGNDVEF SWLRGNDSVR GLENLRLAQY TIQQYFTLVT VSQQETGNYT RLVLQFELRR 240
  241 NVLYFILETY VPSTFLVVLS WVSFWISLES VPARTCIGVT TVLSMTTLMI GSRTSLPNTN 300
  301 CFIKAIDVYL GICFSFVFGA LLEYAVAHYS SLQQMAVKDR GPAKDSEEVN ITNIINSSIS 360
  361 SFKRKISFAS IEISGDNVNY SDLTMKASDK FKFVFREKIG RIIDYFTIQN PSNVDRYSKL 420
  421 LFPLIFMLAN VFYWAYYMYF

Type	Start	End	Confidence
Signal Peptide	1	16	0.87
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	243	0.93
Transmembrane Helix	244	265	0.91
Cytoplasmic	266	274	0.69
Transmembrane Helix	275	294	0.89
Non-Cytoplasmic	295	304	0.77
Transmembrane Helix	305	327	0.87
Cytoplasmic	328	419	0.90
Transmembrane Helix	420	437	0.94
Non-Cytoplasmic	438	440	0.75