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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: TGBR3_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVTSHHMIP VMVVLMSACL ATAGPEPSTR CELSPINASH PVQALMESFT VLSGCASRGT  60
   61 TGLPREVHVL NLRSTDQGPG QRQREVTLHL NPIASVHTHH KPIVFLLNSP QPLVWHLKTE 120
  121 RLAAGVPRLF LVSEGSVVQF PSGNFSLTAE TEERNFPQEN EHLLRWAQKE YGAVTSFTEL 180
  181 KIARNIYIKV GEDQVFPPTC NIGKNFLSLN YLAEYLQPKA AEGCVLPSQP HEKEVHIIEL 240
  241 ITPSSNPYSA FQVDIIVDIR PAQEDPEVVK NLVLILKCKK SVNWVIKSFD VKGNLKVIAP 300
  301 NSIGFGKESE RSMTMTKLVR DDIPSTQENL MKWALDNGYR PVTSYTMAPV ANRFHLRLEN 360
  361 NEEMRDEEVH TIPPELRILL DPDHPPALDN PLFPGEGSPN GGLPFPFPDI PRRGWKEGED 420
  421 RIPRPKQPIV PSVQLLPDHR EPEEVQGGVD IALSVKCDHE KMVVAVDKDS FQTNGYSGME 480
  481 LTLLDPSCKA KMNGTHFVLE SPLNGCGTRH RRSTPDGVVY YNSIVVQAPS PGDSSGWPDG 540
  541 YEDLESGDNG FPGDGDEGET APLSRAGVVV FNCSLRQLRN PSGFQGQLDG NATFNMELYN 600
  601 TDLFLVPSPG VFSVAENEHV YVEVSVTKAD QDLGFAIQTC FLSPYSNPDR MSDYTIIENI 660
  661 CPKDDSVKFY SSKRVHFPIP HAEVDKKRFS FLFKSVFNTS LLFLHCELTL CSRKKGSLKL 720
  721 PRCVTPDDAC TSLDATMIWT MMQNKKTFTK PLAVVLQVDY KENVPSTKDS SPIPPPPPQI 780
  781 FHGLDTLTVM GIAFAAFVIG ALLTGALWYI YSHTGETARR QQVPTSPPAS ENSSAAHSIG 840
  841 STQSTPCSSS STA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle