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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: BCAM_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPPDARAGL LWLTLLLSGY SGAQAELHVS VPPRVEVMRG EQIALDCTPR EHPENYVLEW  60
   61 LLVDASGARH RLASVEPQGS EFLGTIHNSR GRRPPYKIDS LGRLVIAEAQ VGDERDYVCV 120
  121 VKAGAAGTSE ATSSVRVFAT PEATEVAPNK GTLSVMEQFA QEIATCSSNN GNPVPRITWY 180
  181 QNGQRLDVPM ELNSKGYMTS RTVREASGLY SLTSTLYLRL HKEDRDASFH CAAHYDLPSG 240
  241 QHGRLDSHTF RLTLHYPTEH VEFWVGSPST TEGWVREGDA VQLLCQGDGS PSPEYSFFRE 300
  301 QGNQEEQLNV NLKGNLTLEG VHRSQSGIYG CRVEDYDADE EVQLVKKLKL HVAYLDPLEL 360
  361 SVPEEFSVFL NSSGTVVNCS ARGLPAPIVR WTKDSVTVAD GPILSLDSVT FDSAGTYTCE 420
  421 ASTPTVPLLS RTQSFQLVVQ GAPELKPNEI KPKSGTSWTE GDEVMLTCSA RGFPEPKLTW 480
  481 SQRGDTTPAE PPFEGRGWMS SSLTLKVTSA LSREGVSCEA SNIHGKNGHV FHFGSVAPQT 540
  541 AQAGVAVMAV AVSVGLLLLV VAAFYCMRRK GRPGCCQRAE KGAPPAREPE LSHSGSERPE 600
  601 HTGLLMGGPS GGGRGGNGGF GDEC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle