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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ABCA2_RAT
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFLHQLQLL LWKNVTLKRR SPWVLAFEIF IPLVLFFILL GLRQKKPTIS VKEAFYTAAP  60
   61 LTSAGILPVM QSLCPDGQRD EFGFLQYANS TVTQLLERLN RVVEESNLFD PERPSLGSEL 120
  121 EALHQRLEAL SSGPGTWESH SARPAVSSFS LDSVARDKRE LWRFLMQNLS LPNSTAQALL 180
  181 AARVDPSEVY RLLFGPLPDL DGKLGFLRKQ EPWSHLGSNP LFQMEELLLA PALLEQLTCA 240
  241 PGSGELGRIL TMPEGHQVDL QGYRDAVCSG QATARAQHFS DLATELRNQL DIAKIAQQLG 300
  301 FNVPNGSDPQ PQAPSPQSLQ ALLGDLLDVQ KVLQDVDVLS ALALLLPQGA CAGRAPAPQA 360
  361 GSPSGPANST GVGANTGPNT TVEEGTQSPV TPASPDTLQG QCSAFVQLWA GLQPILCGNN 420
  421 RTIEPEALRR GNMSSLGFTS KEQRNLGLLV HLMTSNPKIL YAPAGSEADH VILKANETFA 480
  481 FVGNVTHYAQ VWLNISAEIR SFLEQGRLQQ HLHWLQQYVA DLRLHPEAMN LSLDELPPAL 540
  541 RLDYFSLPNG TALLQQLDTI DNAACGWIQF MSKVSVDIFK GFPDEESIVN YTLNQAYQDN 600
  601 VTVFASVIFQ TRKDGSLPPH VHYKIRQNSS FTEKTNEIRR AYWRPGPNTG GRFYFLYGFV 660
  661 WIQDMIERAI INTFVGHDVV EPGNYVQMFP YPCYTRDDFL FVIEHMMPLC MVISWVYSVA 720
  721 MTIQHIVAEK EHRLKEVMKT MGLNNAVHWV AWFITGFVQL SISVTALTAI LKYGQVLMHS 780
  781 HVLIIWLFLA VYAVATIMFC FLVSVLYSKA KLASACGGII YFLSYVPYMY VAIREEVAHD 840
  841 KITAFEKCIA SLMSTTAFGL GSKYFALYEV AGVGIQWHTF SQSPVEGDDF NLLLAVTMLM 900
  901 VDTVVYGVLT WYIEAVHPGM YGLPRPWYFP LQKSYWLGSG RTETWEWSWP WAHAPRLSVM 960
  961 EEDQACAMES RHFEETRGME EEPTHLPLVV CVDKLTKVYK NDKKLALNKL SLNLYENQVV1020
 1021 SFLGHNGAGK TTTMSILTGL FPPTSGSATI YGHDIRTEMD EIRKNLGMCP QHNVLFDQLT1080
 1081 VEEHLWFYSR LKSMAQEEIR KEMDKMIEDL ELSNKRHSLV QTLSGGMKRK LSVAIAFVGG1140
 1141 SRAIILDEPT AGVDPYARRA IWDLILKYKP GRTILLSTHH MDEADLLGDR IAIISHGKLK1200
 1201 CCGSPLFLKG AYGDGYRLTL VKRPAEPGTS QEPGMASSPS GRPQLSNCSE MQVSQFIRKH1260
 1261 VASSLLVSDT STELSYILPS EAVKKGAFER LFQQLEHSLD ALHLSSFGLM DTTLEEVFLK1320
 1321 VSEEDQSLEN SEADVKESRK DALPGAEGLT AVESQAGNLA RCSELAQSQA SLQSASSVGS1380
 1381 ARGDEGAGYT DGYGDYRPLF DNLQDPDSVS LQEAEMEALA RVGQGSRKLE GWWLKMRQFH1440
 1441 GLLVKRFHCA RRNSKALCSQ ILLPAFFVCV AMTVALSVPE IGDLPPLVLS PSQYHNYTQP1500
 1501 RGNFIPYANE ERREYRLRLS PDASPQQLVS TFRLPSGVGA TCVLKSPANG SLGPMLNLSS1560
 1561 GESRLLAARF FDSMCLESFT QGLPLSNFVP PPPSPAPSDS PLSPDEDSLL AWNTSLPPTA1620
 1621 GPETWTWAPS LPRLVHEPVR CTCSAQGTGF SCPSSVGGHP PQMRVVTGDI LTDITGHNVS1680
 1681 EYLLFTSDRF RLHRYGAITF GNIQKSIPAP IGTRTPLMVR KIAVRRVAQV LYNNKGYHSM1740
 1741 PTYLNSLNNA ILRANLPKSK GNPAAYGITV TNHPMNKTSA SLSLDYLLQG TDVVIAIFII1800
 1801 VAMSFVPASF VVFLVAEKST KAKHLQFVSG CNPVIYWLAN YVWDMLNYLV PATCCIIILF1860
 1861 VFDLPAYTSP TNFPAVLSLF LLYGWSITPI MYPASFWFEV PSSAYVFLIV INLFIGITAT1920
 1921 VATFLLQLFE HDKDLKVVNS YLKSCFLIFP NYNLGHGLME IAYNEYINEY YAKIGQFDKM1980
 1981 KSPFEWDIVT RGLVAMTVEG FVGFFLTIMC QYNFLRQPQR LPVSTKPVED DVDVASERQR2040
 2041 VLRGDADNDM VKIENLTKVY KSRKIGRILA VDRLCLGVRP GECFGLLGVN GAGKTSTFKM2100
 2101 LTGDESTTGG EAFVNGHSVL KDLLQVQQSL GYCPQFDALF DELTAREHLQ LYTRLRGIPW2160
 2161 KDEAQVVRWA LEKLELTKCA DKPAGSYSGG NKRKLSTAIA LIGYPAFIFL DEPTTGMDPK2220
 2221 ARRFLWNLIL DLIKTGRSVV LTSHSMEECE AVCTRLAIMV NGRLRCLGSI QHLKNRFGDG2280
 2281 YMITVRTKSS QNVKDVVRFF NRNFPEAMLK ERHHTKVQYQ LKSEHISLAQ VFSKMEHVVG2340
 2341 VLGIEDYSVS QTTLDNVFVN FAKKQSDNVE QQEAEPSTLP SPLGLLSLLR PRPAPTELRA2400
 2401 LVADEPEDLD TEDEGLISFE EERAQLSFNT DTLC

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