YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	EAA1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKSNGEEPR MGSRMERFQQ GVRKRTLLAK KKVQNITKED VKSYLFRNAF VLLTVSAVIV  60
   61 GTILGFALRP YKMSYREVKY FSFPGELLMR MLQMLVLPLI ISSLVTGMAA LDSKASGKMG 120
  121 MRAVVYYMTT TIIAVVIGII IVIIIHPGKG TKENMYREGK IVQVTAADAF LDLIRNMFPP 180
  181 NLVEACFKQF KTSYEKRSFK VPIQANETLL GAVINNVSEA METLTRIREE MVPVPGSVNG 240
  241 VNALGLVVFS MCFGFVIGNM KEQGQALREF FDSLNEAIMR LVAVIMWYAP LGILFLIAGK 300
  301 ILEMEDMGVI GGQLAMYTVT VIVGLLIHAV IVLPLLYFLV TRKNPWVFIG GLLQALITAL 360
  361 GTSSSSATLP ITFKCLEENN GVDKRITRFV LPVGATINMD GTALYEALAA IFIAQVNNFD 420
  421 LNFGQIITIS ITATAASIGA AGIPQAGLVT MVIVLTSVGL PTDDITLIIA VDWFLDRLRT 480
  481 TTNVLGDSLG AGIVEHLSRH ELKNRDVEMG NSVIEENEMK KPYQLIAQDN EPEKPVADSE 540
  541 TKM

Type	Start	End	Confidence
Cytoplasmic	1	45	0.87
Transmembrane Helix	46	68	0.89
Non-Cytoplasmic	69	90	0.80
Transmembrane Helix	91	111	0.93
Cytoplasmic	112	123	0.79
Transmembrane Helix	124	146	0.94
Non-Cytoplasmic	147	239	0.87
Transmembrane Helix	240	260	0.90
Cytoplasmic	261	277	0.85
Transmembrane Helix	278	299	0.92
Non-Cytoplasmic	300	314	0.76
Transmembrane Helix	315	339	0.88
Cytoplasmic	340	345	0.76
Transmembrane Helix	346	367	0.79
Non-Cytoplasmic	368	425	0.59
Transmembrane Helix	426	460	0.63
Cytoplasmic	461	543	0.62