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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SDC1_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRAALWLWL CALALRLQPA LPQIVTANVP PEDQDGSGDD SDNFSGSGTG ALPDMTLSRQ  60
   61 TPSTWKDVWL LTATPTAPEP TSRDTEATLT SILPAGEKPE EGEPVAHVEA EPDFTARDKE 120
  121 KEATTRPRET TQLPVTQQAS TAARATTAQA SVTSHPHGDV QPGLHETLAP TAPGQPDHQP 180
  181 PSVEDGGTSV IKEVVEDETT NQLPAGEGSG EQDFTFETSG ENTAVAGVEP DLRNQSPVDE 240
  241 GATGASQGLL DRKEVLGGVI AGGLVGLIFA VCLVAFMLYR MKKKDEGSYS LEEPKQANGG 300
  301 AYQKPTKQEE FYA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle