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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|11320978
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALALGLGLWL GALAGDPGRG CGPCPLPCFC SPAPDAACRV NCSGRWLQTL GPSLRIPADA  60
   61 TALDLSHNLL QTLDIRLLVN LSGLVELDLS NNRISTLEEG VFANLFNLSE INLSGNPFEC 120
  121 NCGLAWLPRW AKEQQVHVVQ SEATTCRGPV PLAGRPLLST PLLDNACGEE YVACLPDNSS 180
  181 GAVAAVPFFF AHQGPLETAA CSAFCFSAGE GLAALSEQNQ CLCGAGQPSN TSAACSSWCS 240
  241 SILLSFNSAC GGPTLLQHTF PASPGAALVG PHGPLASGQP ADFHINSPLP ISSTCWNFGD 300
  301 GSPEVDMAGP AATHSYVLPG GYHVTVVLTL GAGSALLETE VQVEVAPTVL ELVCPSFVHS 360
  361 DESLDLGIRH RGGSALEVTY SILALDKEPA QVVHPLCPSD TEIFPGNGHC YRLVAEKAPW 420
  421 LQAQEQCRTW AGAALAMVDS PAIQHFLVSK VTRSLDVWIG FSSVEGKEGL DPQGEAFSLE 480
  481 SCQNWLPGEP HPATEEHCVR LGPAGQCNTD LCSAPHSYVC ELRPGGPVGD ADNFLLGVSG 540
  541 GGRSGPLQPL AQQGTLQGPL QPVEVMVFPG LSPSREAFLT AAEFETQELE DPVQLRLQVY 600
  601 RHSREAVAPE GSSELDNSTE PAPKCVPEEL WCPGANVCVP FDALCNSHVC INGSASRLGL 660
  661 PRASYTLWKE FFFSVPAGPP TQYLVTLHGQ DVPMLPGDLV ALQHDAGPGT FLHCPLASSC 720
  721 PGQALYLSTN ASDWMTNLPV HLEEAWAGPV CSLQLLLVTE QLTPLLGLGS NPGLQHPGHY 780
  781 EVRATVGNSI SRQNLSCSFS VVSPVAGLRV IHPIPLDGHI YVPTNGSILV LQVDSGANAT 840
  841 ATAHWFGGNV SAPFEDACPP EVDFLKQDCT EEANATLFSV LVLPRLKEGD HTVEIVAQNG 900
  901 ASQANLSLRV TAEEPICGLR AVPSPEARVL QGILVRYSPM VEAGSDVAFR WTIDDKQSLT 960
  961 FHNTVFNVIY QTAAVFKLSL TASNHVSNIT VNYNVTVERM NKMHGLWVSA VPAVLPPNAT1020
 1021 LALTGGVLVD SAVEVAFLWN FGDGEQVLRQ FKPPYDESFQ VPDPTVAQVL VEHNTTHIYN1080
 1081 TPGEYNLTVT VSNTYENLTQ QVPVSVRTVL PNVTIGMSSN VLLAGQPITF FPYPLPSADG1140
 1141 VLYTWDFGDG SPVLIQSQPV LNHTYSMTGT YRISLEVNNT VSSVAAHVDI CVFQELHGLT1200
 1201 VYLNQSVEQG APMVVNASVE SGDNITWTFD MGDGTVFTGP EATVEHVYLR AQNFTVTVGA1260
 1261 TSPAGHLSQS LHVQVFVLEV LRIEPSTCIP TQPSAQIMAH VTGDPAHYLF DWTFGDGSSN1320
 1321 VTVHGHPSVT HNFTRSGIFP LALVLSSHVN KAHYFTSICV EPEICNVTLQ PERQVVKLGD1380
 1381 EAWLVAYPWP PFPYRYTWDF GTEDSIHTQT GGSEVTFIYR EPGSYLVIVT VSNNISSTND1440
 1441 SAFVDVQEPV SVTGIRINGS HVLELQQPYL FSAMGNGSPA AYLWELGDGS QHEGPEVTHI1500
 1501 YSSTGDFTVR VSGWNEVSRS EAQLNITVKQ RVRGLTINAS PTVVPLNGSV SFSTLLEVGS1560
 1561 DVHYSWVLCD RCTPIPGGPT ISYTFRSVGT FNIIVTAENE VGSAQDSIFI YVLQLIEGLQ1620
 1621 VVGGDGGCCF PTNYTLQLQA AVRDGTNISY SWTAQQDGGP TLISSGKSFS LTALKASTYY1680
 1681 VHLRATNMLG SASANRTIDF VEPVESLILS ASPNPAAVNT SLTLGAELAG GSGVVYTWYL1740
 1741 EEGLSRETSM PSTTHTFAAP GLHLVRVTAE NQLGSVNATI EVAVHGPVGG LSIRTSEPDS1800
 1801 IFVAAGSTVP FWGQLAEGTN VTWCWTLPGG SKYSQYIDVR FPAAGHFSLW LNASNAVSWV1860
 1861 SAVYNLTVEE PIMNLVLWAS SKVVAPGQPV HFQILLAAGS AVTFRLQVGG SIPEVLPSLH1920
 1921 FSHSFFRVGD HMVSVQAENH VSRAQAQVRI LVLEAIVGLQ VPNCCEPGMA TGTEKNFTAR1980
 1981 VQRGSRVAYA WYFSLQKVQG DSLVILSGRD VTYTPVAAGI LEIHVRAFNE LGGVNLTLVV2040
 2041 EVQDIIQYVT LQSGRCFTNR SARFEAATSP SPRRVTYHWD FGDGTPVQET EESWTDHYYL2100
 2101 HPGDYRVEVN ATNLVSFFVA QAQVTVQVLA CREPEVEVAL PLQVLMRRSQ RNYLEAHVDL2160
 2161 RNCVSYQTEY RWEVYRTTSC QRAGRMTQMV LPGVDVSRPQ LVVPRLALPV GHYCFVFVVS2220
 2221 FGDTPLARSI QANVTVAAER LVPIIEGGSY RVWSDTQDLV LDGSKSYDPN LEDGDQTPLN2280
 2281 FHWACVASTQ SETGGCVLKL WARGSSVVTI PLERLEAGVE YTFNLIVWKA GRKEEATNQT2340
 2341 VLIRSGRVPI VSLECVSCKA QAVYEVSRSS YVYLEGHCHN CSSGSKQGRW AARTFSNKTL2400
 2401 MLNENTTSTG STGMHLVVRP GALHDGEGYI FTLTVLGHSG EEEGCRSIRL LPNRPPLGGS2460
 2461 CRLFPLESVR GLTTKVHFEC TGWRDAEDGG APLVYALRLK RCHQNYCEDF CIYKGSLSTY2520
 2521 GAVLPPGFQP LFVVSLTVVV EDQLGASVVA LNRSLTIVLP EPSGNPADLI PWLHSLTASV2580
 2581 LPGLLRQADP QHVIEYSLAL ITVLNEYEQA PDMVSEPNLE QQLRAQMRKN ITETLISLRV2640
 2641 NTVDDIQQIT AALAQCMVSS RELMCRSCLK KMLQKLEGMM RILQAETTEG TLTPTTIADS2700
 2701 ILNITGDLIH LASLDMQGPQ PLELGAEPPS LMVASKAYNL SSALMCILMR SRVLNEEPLT2760
 2761 LAGEEIVALG KRADPLSLLC YGKAWGPSCH FSIPEAFSGA LSDLSDVVQL ILLVDSNPFP2820
 2821 FGYISNYTVS TKVASMAFQT QTGTQIPIEQ LAADGSITVK VPNNSDQAAQ SSHSPVGSTI2880
 2881 VQPRASVSAV VTADNSNPQA GLHLRITYTV LNARYLSEER EPYLAVYLHS VSQPNEYNCS2940
 2941 ASRRISLEVL EGADHRPYTF FIAPGTGTLG RSYYLNLTSH FHWSALEVSV GLYTSLCQYF3000
 3001 SEEAMMWRTE GIVPLEETSP SQAVCLTRHL TAFGASLFVP PSHVQFIFPE PSVSINYIVL3060
 3061 LTCVICLVTY VIMAMILRKL DQLDVSRVRV IPFCGKGGRF KYEILVKTGW SRGSGTTAHV3120
 3121 GIMLYGEDNR SGHRHLDGDR AFHRNSLDIF QIATPQSLGS VWKIRVWHDN KGLSPAWFLQ3180
 3181 HIIVRDLQSA RSTFFLVNDW LSVETEANGG LVEKEVLAAN EAALWQFQRL LVAELQRGFF3240
 3241 DKHIWLSIWD RPPRSRFTRV QRVTCCVLLL CLFLAANAVW YGVVGDTTYS MGPVSSLMSP3300
 3301 SVDTVAIGLV SSVVVYPVYL AVLFLFRMSR SKVSGDQNPT PTGQQALDVD SYLDPSVLDS3360
 3361 SLLTLSGLTE AFSGQVKNDL FLEDAKSLVC WPSSEGTLSW PDLLSDPSVM SSTLQRLAQG3420
 3421 RPGCMLGSEE DGASLVSPSL PAKYLSASDE DLIHQVLADG ANNPDPTQDA LIERDLLTSL3480
 3481 SSAPGEKTET LILQTMGEKR PPSMGLTWEQ SPVTRLSRTG LVEGLRKRLL PTWCAPLAHG3540
 3541 LSLLLVAVAV AVSGWIGASF PPSVSVMWLL SSSSSFLASF LGWEPLKVLL EALYFSLVAK3600
 3601 RLHPDEDDTL VESPAVTPVS ERVPRVRPPH GFALFLAKEE ARKVKRLHDM LKSLLVYMLF3660
 3661 LLVTLLANYG DASCHGHAYR LQSAIKQELD SQAFLAITRS DEFWPWMSHV LLPYVHGNQS3720
 3721 SPELGPPRLR QVRLQEAFCP DPSSSEHMCS ATGSLSTSDY GIGWQSVVQN GSETWAYSAP3780
 3781 DLLGAWYWGY CAVYDSGGYI QELGLSLEES RARLGFLQLH NWLDSRSRAV FVELTRYSPA3840
 3841 VGLHAAVTLR LEFPVAGHAL AAFSVRPFAL RRLSTGLSLP LLTSVCLLLF ALYFSVAEVH3900
 3901 TWRREGCART ARPDVGARWL LVMLTAATGL VRLAQLRIAD RQWTRFVHDH PHHFTSFDQV3960
 3961 AQLGSVARGL AASLLFLLLV KAAQHVRFVR QWSVFGKTLC RALPELMGAT LGLVLLGVAY4020
 4021 AQMAILLISS GADTLYSMAR AFLVLCPGAR VPTLCPSESW YLSPLLCVGL WALRVWGALR4080
 4081 LGAVLLRWRY HALRGELYRP AWEPQDYEMV ELFLRRLRLW MGFTKVKEFR HKVRFEGMDP4140
 4141 LPSRSSRGSK SSPVVPPPSA GSEASHPSTS SSQPDGLSAG LRRSALRLEP EPSRLHAVFE4200
 4201 SLLVQFDRLN QATEDVYQLE QQLQSLRGHG HSGPPSSPSP GGFPASQPAL PSRLARASQG4260
 4261 PDQTTGPSRV SLWPNNKVHP SST

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle