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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: DUOX2_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPTSLKTLV LLGALLTGPL GPAGGQDAPS LPREVQRYDG WFNNLKYHQR GAAGSQLRRL  60
   61 VPANYADGVY QALQEPLLPN ARLLSDAVSK GKAGLPSAHN RTVLGLFFGY HVLSDLVSVE 120
  121 TPGCPAEFLN IYIPRGDPVF DPDKRGNVVL PFQRSRWDRS TGQSPSNPRD LTNQVTGWLD 180
  181 GSAIYGSSHS WSDTLRSFSG GQLASGPDPA FPRNSQNSLL MWMAPDPATG QGGPQGLYAF 240
  241 GAQRGNREPF LQALGLLWFR YHNLCAKRLA QEHPHWGDEE LFQHARKRVI ATYQNIALYQ 300
  301 WLPSFLQKTP PEYSGYRPFM DPSISPEFVA ASEQFLSTMV PPGVYMRNSS CHFREFPKEG 360
  361 SSSSPALRVC NNYWIRENPS LKTAQDVDQL LLGMASQISE LEDRIVIEDL RDYWPGPDRY 420
  421 SRTDYVASSI QSGRDMGLPS YSQALQALGL EPPKNWSALN PKVDPQVLEA TAALYNQDLS 480
  481 RLELFLGGLL ESHGDPGPLF SNIILDQFVR LRDGDRYWFE NTRNGLFSKE EIAEIRNTTL 540
  541 RDVLVAVSNV DPSALQPNVF FWQEGAPCPQ PQQLTTEGLP QCVPVTVIDY FEGSGAGYGV 600
  601 TLLAVCCFPV VSLIIAWVVA RFRNRERKML LKKGKESLKK QTASDGVPAM EWPGPKESSY 660
  661 PVTVQLLPDR SLKVLDKRLT VLRTIQLQPT QQVNLILSSS HGRRTLLLKI PKEYDLVLMF 720
  721 NSEEDRDAFV QLLQDLCVCS TPGLRIAEMD EKELLRKAVT KQQRAGILEI FFRQLFAQVL 780
  781 DINQADAGTL PLDSSQQVRE ALTCELSRAE FADSLGLKPQ DMFVESMFSL ADKDGNGYIS 840
  841 FREFLDILVV FMKGSPQDKS RLMFTMYDLD GNGFLSKEEF FTMMRSFIEI SNNCLSKDQL 900
  901 AEVVESMFRE SGFQDKEELT WEDFHFMLRD HDSDLRFTQL CVKGGAGGTG DIFKQSNACR 960
  961 VSFLTRTPGN RVMAPSPRLY TEALQEKMQR GFLAQKLKQF KRFVENYRRH IVCVTIFSAI1020
 1021 CAGLFADRAY YYGFASPPTD IEETTYVGII LSRGTAASIS FMFSYILLTM CRNLITFLRE1080
 1081 TFLNRYIPFD AAVDFHRWIA MAAVVLAVVH SLGHAVNVYI FSVSPLSLMT CVFPSVFVND1140
 1141 GSKLPPKYYW WFFETVPGMT GVLLLLVLAI MYVFASHHFR RHSFRGFWLT HHLYVVLYAL1200
 1201 IIIHGSYALI QLPSFHIYFL VPAIIYVGDK LVSLSRKKVE ISVVKVELLP SGVTYLQFQR1260
 1261 PKTFEYKSGQ WVRIACLSLG TNEYHPFTLT SAPHEDTLSL HIRAVGPWTT RLREIYSPPV1320
 1321 GGTSARYPKL YLDGPFGEGH QEWHKFEVSV LVGGGIGVTP FASILKDLVF KSSMGTQMLC1380
 1381 KKIYFIWVTR TQRQFEWLAD IIREVEENGS RDLVSVHIYI TQLAEKFDLR TTMLYICERH1440
 1441 FQKVLNRSLF TGLRSVTHFG RPPFELFLDS LQEVHPQVHK IGVFSCGPPG MTKNVEKACQ1500
 1501 LINRQDRAHF VHHYENF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle