YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GTR1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.97
Transmembrane Helix	8	28	0.89
Non-Cytoplasmic	29	63	0.94
Transmembrane Helix	64	87	0.90
Cytoplasmic	88	95	0.87
Transmembrane Helix	96	115	0.94
Non-Cytoplasmic	116	122	0.82
Transmembrane Helix	123	145	0.92
Cytoplasmic	146	155	0.84
Transmembrane Helix	156	176	0.92
Non-Cytoplasmic	177	184	0.85
Transmembrane Helix	185	207	0.90
Cytoplasmic	208	271	0.96
Transmembrane Helix	272	292	0.87
Non-Cytoplasmic	293	306	0.84
Transmembrane Helix	307	328	0.92
Cytoplasmic	329	335	0.92
Transmembrane Helix	336	358	0.93
Non-Cytoplasmic	359	366	0.80
Transmembrane Helix	367	391	0.86
Cytoplasmic	392	401	0.85
Transmembrane Helix	402	422	0.91
Non-Cytoplasmic	423	429	0.74
Transmembrane Helix	430	450	0.94
Cytoplasmic	451	492	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPSSKKVTG RLMLAVGGAV LGSLQFGYNT GVINAPQKVI EEFYNQTWNH RYGESIPSTT  60
   61 LTTLWSLSVA IFSVGGMIGS FSVGLFVNRF GRRNSMLMMN LLAFVSAVLM GFSKLGKSFE 120
  121 MLILGRFIIG VYCGLTTGFV PMYVGEVSPT ALRGALGTLH QLGIVVGILI AQVFGLDSIM 180
  181 GNADLWPLLL SVIFIPALLQ CILLPFCPES PRFLLINRNE ENRAKSVLKK LRGTADVTRD 240
  241 LQEMKEEGRQ MMREKKVTIL ELFRSPAYRQ PILIAVVLQL SQQLSGINAV FYYSTSIFEK 300
  301 AGVQQPVYAT IGSGIVNTAF TVVSLFVVER AGRRTLHLIG LAGMAGCAVL MTIALALLEQ 360
  361 LPWMSYLSIV AIFGFVAFFE VGPGPIPWFI VAELFSQGPR PAAVAVAGFS NWTSNFIVGM 420
  421 CFQYVEQLCG PYVFIIFTVL LVLFFIFTYF KVPETKGRTF DEIASGFRQG GASQSDKTPE 480
  481 ELFHPLGADS QV