YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CHKA_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTKFCTGGE AEPSPLGLLL SCGGSAAPTP GVGQQRDAAG ELESKQLGGR SQPLALPPPP  60
   61 PPPLPLPPPP SPPLADEQPE PRTRRRAYLW CKEFLPGAWR GLREDQFHIS VIRGGLSNML 120
  121 FQCSLPDSIA SVGDEPRKVL LRLYGAILKM RSCNKEGSEQ AQNENEFQGA EAMVLESVMF 180
  181 AILAERSLGP KLYGIFPQGR LEQFIPSRRL DTEELCLPDI SAEIAEKMAT FHGMKMPFNK 240
  241 EPKWLFGTME KYLNQVLRLK FSREARVQQL HKFLSYNLPL ELENLRSLLQ YTRSPVVFCH 300
  301 NDCQEGNILL LEGQENSEKQ KLMLIDFEYS SYNYRGFDIG NHFCEWMYDY TYEKYPFFRA 360
  361 NIQKYPTRKQ QLHFISSYLT TFQNDFESLS SEEQSATKED MLLEVNRFAL ASHFLWGLWS 420
  421 IVQAKISSIE FGYMEYAQAR FDAYFDQKRK LGV

Type	Start	End	Confidence
Signal Peptide	1	33	0.76
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	453	0.99