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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CA2D2_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVPARTCGA SWPGPVRTAR PWPGRGPRPC PDPRGPASGP ARPLLLLLPP LLLLPLLTAP  60
   61 GASAYSFPQQ HTMQHWARRL EQEIDGVMRI FGGVQQLREI YKDNRNLFDV QENEPQKLVE 120
  121 KVAGDIESLL DRKVQALKRL ADAAENFQKA HRWQDNIKEE DIMYYDAKAD AELDDPESED 180
  181 MERGSKTSAL RLDFIEEPNF KNKVNYSYTA VQIPTDIYKG STVILNELNW TEALENVFIE 240
  241 NRRQDPTLLW QVFGSATGVT RYYPATPWRA PKKIDLYDVR RRPWYIQGAS SPKDMVIIVD 300
  301 VSGSVSGLTL KLMKTSVCEM LDTLSDDDYV NVASFNEKAQ PVSCFTHLVQ ANVRNKKVFK 360
  361 EAVQGMVAKG TTGYKAGFEY AFDQLQNSNI TRANCNKMIM MFTDGGEDRV QDVFEKYNWP 420
  421 NRTVRVFTFS VGQHNYDVTP LQWMACTNKG YYFEIPSIGA IRINTQEYLD VLGRPMVLAG 480
  481 KDAKQVQWTN VYEDALGLGL VVTGTLPVFN LTQDGPGDKK NQLILGVMGI DVALNDIKRL 540
  541 TPNYTLGANG YVFAIDLNGY VLLHPNLKPQ ITNFREPVTL DFLDAELEDE NKEEIRRSMI 600
  601 DGDKGHKQIR TLVKSLDERY IDEVIRNYTW VPIRSTNYSL GLVLPPYSTY YLQANLSDQI 660
  661 LQVKLPISKL KDFEFLLPSS FESEGHVFIA PREYCKDLNA SDNNTEFLKN FIELMEKVTP 720
  721 DSKQCNNFLL HNLILDTGIT QQLVERVWRD QDLNTYSLLA VFAATDGGIT RVFPNKAAED 780
  781 WTENPEPFNA SFYRRSLDNR GYIFKPPHQD SLLRPLELEN DTVGVLVSTA VELSLGRRTL 840
  841 RPAVVGVKLD LEAWAEKFKV LASNRTHQDQ PQKQCGPSSH CEMDCEVNNE DLLCVLIDDG 900
  901 GFLVLSNQNH QWDQVGRFFS EVDANLMLAL YNNSFYTRKE SYDYQAACAP QPPGNLGAAP 960
  961 RGVFVPTIAD FLNLAWWTSA AAWSLFQQLL YGLIYHSWFQ ADPAEAEGSP ETRESSCVMK1020
 1021 QTQYYFGSVN ASYNAIIDCG NCSRLFHAQR LTNTNLLFVV AEKPLCSQCE VGRLLQKETH1080
 1081 CPADGPEQCE LVQRPRYRTG PHICFDYNAT EDTSDCGRGA SFPPSLGVLV SLQLLLLLGL1140
 1141 PPRPQPQIHS FTPSRRL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle