YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ABCA5_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.76
Transmembrane Helix	36	53	0.75
Non-Cytoplasmic	54	219	0.92
Transmembrane Helix	220	242	0.94
Cytoplasmic	243	261	0.95
Transmembrane Helix	262	285	0.94
Non-Cytoplasmic	286	296	0.78
Transmembrane Helix	297	318	0.93
Cytoplasmic	319	326	0.84
Transmembrane Helix	327	348	0.93
Non-Cytoplasmic	349	354	0.85
Transmembrane Helix	355	377	0.85
Cytoplasmic	378	395	0.83
Transmembrane Helix	396	417	0.87
Non-Cytoplasmic	418	863	0.91
Transmembrane Helix	864	884	0.92
Cytoplasmic	885	970	0.84
Transmembrane Helix	971	988	0.61
Non-Cytoplasmic	989	1020	0.68
Transmembrane Helix	1021	1041	0.74
Cytoplasmic	1042	1069	0.85
Transmembrane Helix	1070	1092	0.82
Non-Cytoplasmic	1093	1101	0.76
Transmembrane Helix	1102	1125	0.91
Cytoplasmic	1126	1136	0.90
Transmembrane Helix	1137	1158	0.94
Non-Cytoplasmic	1159	1164	0.81
Transmembrane Helix	1165	1187	0.93
Cytoplasmic	1188	1206	0.89
Transmembrane Helix	1207	1225	0.96
Non-Cytoplasmic	1226	1642	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATAIRDVGV WRQTRTLLLK NYLVKCRTKK SSVQEILFPL FFLFWLILIS MMHPNKKYEE  60
   61 VSDIELSPMD KSILSNLILG YTPVTNTTSS VMQRVSTDHL PDVLVTEEYA SEKELLASSL 120
  121 SKPSNFVGVV FKDVMSYELR FFPDMVPVSS VYMDSRAGCS KSCDAAQYWS SGFTALQASI 180
  181 DAAIIQLKTN VSLWRELEST KAVIMGEAAV VEIDTFPRGV ILIYLVIAFS PFGYFLAIHI 240
  241 VAEKEKRLKE FLKIMGLHDT AFWLSWVLLY TSLIFLMSLL MAVIATASSL FPQSSSIVIF 300
  301 LLFFLYGLSS VFFALMLTPL FKKSKHVGVV EFFVTVVFGF VGLLIVLVES FPRSLVWLFS 360
  361 PLCQCAFLIG IAQVMHLEDF NEGALFSSLT EGPYPLIITL TMLALDSVFY ALLAVYLDQV 420
  421 IPGEFGLRRS SLYFLKPSYW SKNKRNYKEL SEGNINGNIS LNEIVEPVSS EFIGKEAIRI 480
  481 SGIQKAYRKK NETVEALRNL SFDIYEGQIT ALLGHSGTGK STLMNILCGL CPPSDGFASI 540
  541 YGHRVSEIDE MFEARKMIGI CPQSDMNFDV LTVEENLSIL ASVKGIPANN IIQEVQKVLL 600
  601 DLDMQAIKDN QAKKLSGGQK RKLSLGIAVL GNPKILLLDE PTAGMDPCSR HIVWNLLKYR 660
  661 KANRVTVFST HFMDEADILA DRKAVISQGM LKCVGSSIFL KSKWGIGYRL SMYIDRYCAT 720
  721 ESLSSLVRQH IPAAALLQQN DQQIVYSLPF KDMDKFSGLF SALDIHSNLG VISYGVSMTT 780
  781 LEDVFLKLEV EAEIDQADYS VFTQQPREEE TDSKSFDEME QSLLILSETK ASLVSTMSLW 840
  841 KQQVSTIAKF HFLSLKRESK SVRSVLLLLL IFFAVQIFMF LVHHSFKNAV VPIKLVPDLY 900
  901 FLKPGDKPHK YKTSLLLQNS TDSDINDLID FFTQQNIIVA MFNDSDYVSA APHSAALNVV 960
  961 QSEKDYVFTA VFNSTMVYSL PVMMNIISNY YLYHLNVTDT IQIWSTPFIQ EITDIVFKVE1020
 1021 LYFQAALLGI IVTAMPPYFA MENAENHKIK AYTQLKLSGL LPSAYWIGQA VVDIPLFFVV1080
 1081 LTLMLGSLFA FHHGLYFYPV KFLAVVFCLI AYVPSVILFT YIASFTFKKI LNTKEFWSFI1140
 1141 YSVTALACVA VTEITFFLGY GVTAVFHYTF CIAIPIYPLL GCLISFIKGS WKNIPKTENA1200
 1201 YNPWDRLLVA VIMPYLQCVL WIFLLQHYEK KHGGRSIRKD PLFRALSQKA KHKKFPEPPI1260
 1261 NEDEDEDVKA ERLKVKELMG CQCCEEKPAI MVYNLHKEYD DKKDFLHSRK TTKVATKYVS1320
 1321 FCVKKGEILG LLGPNGAGKS TIINILVGDV EPTSGKIFLG DYGSHSNEDD ESTKCMGYCP1380
 1381 QTNPLWPDIT LQEHFEIYGA VKGMSSGDMK EVISRITKAL DLKEHLQKTV KKLPAGIKRK1440
 1441 LCFALSMLGN PQVTLLDEPS TGMDPRAKQH MWRAIRTAFK NKKRAALLTT HYMEEAEAVC1500
 1501 DRVAIMVSGQ LRCIGTVQHL KSKFGKGYFL EIKLKDWIEN LEIDRLQREI QYIFPNASRQ1560
 1561 ESFSSILAYK IPKEDVQSLS QSFAKLEEAK HTFAIEEYSF SQATLEQVFV ELTKEQEEED1620
 1621 NSCGTLNSTL WWERRQEDRV VF