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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NPHN_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLTPLLLM GMLTSGLAES PVPTSAPRGF WALSENLTAV EGTTVKLWCG VRAPGSVVQW  60
   61 AKDGLLLGPN PKMPGFPRYS LEGDRAKGEF HLLIEACDLS DDAEYECQVG RSELGPELVS 120
  121 PKVILSILVS PKVLLLTPEA GSTVTWVAGQ EYVVTCVSGD AKPAPDITFI QSGRTILDVS 180
  181 SNVNEGSEEK LCITEAEARV IPQSSDNGQL LVCEGSNPAL DTPIKASFTM NILFPPGPPV 240
  241 IDWPGLNEGH VRAGENLELP CTARGGNPPA TLQWLKNGKP VSTAWGTEHA QAVAHSVLVM 300
  301 TVRPEDHGAR LSCQSYNSVS AGTQERSITL QVTFPPSAIT ILGSVSQSEN KNVTLCCLTK 360
  361 SSRPRVLLRW WLGGRQLLPT DETVMDGLHG GHISMSNLTF LVRREDNGLP LTCEAFSDAF 420
  421 SKETFKKSLT LNVKYPAQKL WIEGPPEGQY IRTGTRVRLV CLAIGGNPDP SLIWFKDSRP 480
  481 VSEPRQPQEP RRVQLGSVEK SGSTFSRELV LIIGPPDNRA KFSCKAGQLS ASTQLVVQFP 540
  541 PTNLTILANS SALRPGDALN LTCVSISSNP PVNLSWDKEG ERLEDVAAKP QSAPFKGSAA 600
  601 SRSVFLRVSS RDHGQRVTCR AHSEALRETV SSFYRFNVLY PPEFLGEQVR AVTVVEQGQV 660
  661 LLPVSVSANP APEAFNWTFR GYRLSPAGGP RHRILSGGAL QLWNVTRADD GFYQLHCQNS 720
  721 EGTAEALLKL DVHYAPTIRA LRDPTEVNVG GSVDIVCTVD ANPILPEMFS WERLGEEEED 780
  781 LNLDDMEKVS KGSTGRLRIR QAKLSQAGAY QCIVDNGVAP AARGLVRLVV RFAPQVDQPT 840
  841 PLTKVAAAGD STSSATLHCR ARGVPNIDFT WTKNGVPLDL QDPRYTEHRY HQGVVHSSLL 900
  901 TIANVSAAQD YALFKCTATN ALGSDHTNIQ LVSISRPDPP LGLKVVSISP HSVGLEWKPG 960
  961 FDGGLPQRFQ IRYEALETPG FLHVDVLPTQ ATTFTLTGLK PSTRYRIWLL ASNALGDSGL1020
 1021 TDKGIQVSVT TPGPDQAPED TDHQLPTELP PGPPRLPLLP VLFAVGGLLL LSNASCVGGL1080
 1081 LWRRRLRRLA EEISEKTEAG SEDRIRNEYE ESQWTGDRDT RSSTVSTAEV DPNYYSMRDF1140
 1141 SPQLPPTLEE VLYHQGAEGE DMAFPGHLHD EVERAYGPPG AWGPLYDEVR MDPYDLRWPE1200
 1201 VQCEDPRGIY NQVAADMDAV EASSLPFELR GHLV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle