YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NUP58_RAT
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.26
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATGFSFGSG TLGSTTVAPG GTGTGSGFSF GASSTPSVGL NFGTLGSSAT PASTSTSASG  60
   61 FGTGLFGSKP GTGFTLGGTS AGTTATTSAS TTGFSLGFSK PAASATPFAL PVTSTTASGL 120
  121 TLSSALTSAP AASTGFTLNN LGATPATTTA ASTGLSLGGA LAGLGGSLFQ SGNTATSGLG 180
  181 QNALSLSLGT ATPTSAASSE GLGGIDFSTS SDKKSDKTGT RPEDSKALKD ENLPPVICQD 240
  241 VENLQKFVKE QKQVQEEISR MSSKAMLKVQ EDIKALKQLL SLAASGLQRN TLNIDKLKLE 300
  301 TAQELKNAEI ALRTQKTPPG LQHENTAPAD YFRVLVQQFE VQLQQYRQQI EELENHLATQ 360
  361 ANNSHITPQD LSMAMQKIYQ TFVALAAQLQ SIHENVKVLK EQYLSYRKMF LGDAGDVFEA 420
  421 RRTEAKKWQN APRVTTGPTP FSTMPNAAAV AMAATLTQQQ QPATGPQPSL GVSFGTPFGS 480
  481 GIGTGLQSSG LGSSNLGGFG TSSGFGCGTT GASTFGFGTT DKPSGSLSAG FGSSSTSGFN 540
  541 FSNPGITASA GLTFGVSNPA SAGFGTGGQL LQLKRPPAGN KRGKR

Type	Start	End	Confidence
Cytoplasmic	1	9	0.57
Transmembrane Helix	10	32	0.68
Non-Cytoplasmic	33	73	0.46
Transmembrane Helix	74	98	0.69
Cytoplasmic	99	107	0.51
Transmembrane Helix	108	132	0.69
Non-Cytoplasmic	133	145	0.57
Transmembrane Helix	146	169	0.75
Cytoplasmic	170	436	0.56
Transmembrane Helix	437	451	0.26
Non-Cytoplasmic	452	469	0.55
Transmembrane Helix	470	486	0.51
Cytoplasmic	487	495	0.50
Transmembrane Helix	496	517	0.67
Non-Cytoplasmic	518	545	0.79
Transmembrane Helix	546	568	0.69
Cytoplasmic	569	585	0.72