YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MBOA5_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	40	0.95
Transmembrane Helix	41	62	0.88
Non-Cytoplasmic	63	69	0.83
Transmembrane Helix	70	92	0.67
Cytoplasmic	93	110	0.55
Transmembrane Helix	111	133	0.84
Non-Cytoplasmic	134	177	0.74
Transmembrane Helix	178	200	0.76
Cytoplasmic	201	278	0.69
Transmembrane Helix	279	302	0.75
Non-Cytoplasmic	303	329	0.75
Transmembrane Helix	330	350	0.53
Cytoplasmic	351	363	0.59
Transmembrane Helix	364	384	0.74
Non-Cytoplasmic	385	404	0.54
Transmembrane Helix	405	423	0.44
Cytoplasmic	424	425	0.36
Transmembrane Helix	426	445	0.75
Non-Cytoplasmic	446	453	0.48
Transmembrane Helix	454	475	0.88
Cytoplasmic	476	487	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTADGDVG ETLGQMRGLW PGVEDLSLNK LATSLGASEQ ALRLIFSIFL GYPLALFYRH  60
   61 YLFYKDSYLI HLFHAFSGLS IAYFNFGHQF YHSLLCVVLQ FLILRLMGRT ITAVFTTLCF 120
  121 QMAYLLAGYY YTATGDYDIK WTMPHCVLTL KLIGLSIDYY DGGKDRNSLS SEQQKYAILG 180
  181 VPSLLEVAGF SYFYGAFLVG PQFSMNHYMK LVKGQLTDVP GKMPNSTIPA LKRLSLGLVY 240
  241 LVGYTLLSPH ITEDYLLTED YDTRPFWFRC MYMLIWGKFV LYKYVTCWLV TEGVCILSGL 300
  301 GFNGFEENGT VKWDACANMK VWLFETTPRF TGTIASFNIN TNAWVARYIF KRLKFLGNKE 360
  361 LSQGLSLLFL ALWHGLHSGY LICFQMEFLI VIVEKQATNL IRDSPALSSL ASITALQPFY 420
  421 YLVQQTIHWL FMGYSMTAFC LFTWDKWLKV YRSIYFLGHV FFLSLLFTLP YVYKAMVPRK 480
  481 EKLKKRE