YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S38A5_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	63	0.90
Transmembrane Helix	64	84	0.84
Non-Cytoplasmic	85	88	0.65
Transmembrane Helix	89	113	0.85
Cytoplasmic	114	131	0.72
Transmembrane Helix	132	156	0.86
Non-Cytoplasmic	157	175	0.81
Transmembrane Helix	176	197	0.92
Cytoplasmic	198	202	0.71
Transmembrane Helix	203	224	0.89
Non-Cytoplasmic	225	267	0.77
Transmembrane Helix	268	287	0.70
Cytoplasmic	288	299	0.80
Transmembrane Helix	300	323	0.86
Non-Cytoplasmic	324	341	0.86
Transmembrane Helix	342	364	0.92
Cytoplasmic	365	382	0.85
Transmembrane Helix	383	401	0.96
Non-Cytoplasmic	402	409	0.60
Transmembrane Helix	410	432	0.87
Cytoplasmic	433	446	0.84
Transmembrane Helix	447	467	0.94
Non-Cytoplasmic	468	479	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAISCAVGME MQEPKMNGTL STGAAAGYRQ EREGFLPTTH GPAPGRKPVQ FLDFEGKTSF  60
   61 GMSVFNLSNA IMGSGILGLA YAMAHTGVIF FLALLLCIAL LSSYSIHLLL TCASVVGIRA 120
  121 YEQLGQRAFG PAGKVVVAII ICLHNVGAMS SYLFIIKSEL PLVIGTFLHM DPEGDWFLKG 180
  181 NLLIILVSLL IILPLALMKH LGYLGYTSSL SLTCMLFFLI SVIYKKFQLG CVVSHNDTVV 240
  241 ESEPAPLQAF NSSCEAKLFT VDSQMSYTVP IMAFAFVCHP EVLPIYTELC CPTQRRMQAV 300
  301 ANMSIGAMFI MYGLTATFGY LTFYSTVKAE MLEMYTQEDL LILCVRLAVL LAVTLTVPVV 360
  361 LFPIRRALQQ LLFPSKAFSW PRHVAIALIL LILVNILVIC VPTIRDIFGF IGSTSAPSLI 420
  421 FILPSVFYLR IVPADMEPLF SWPKIQALCF GVLGVLFMAI SLGFMFANWA TGQSRMSGH