YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UT2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	132	0.91
Transmembrane Helix	133	154	0.80
Non-Cytoplasmic	155	158	0.71
Transmembrane Helix	159	179	0.89
Cytoplasmic	180	185	0.76
Transmembrane Helix	186	205	0.88
Non-Cytoplasmic	206	212	0.66
Transmembrane Helix	213	236	0.88
Cytoplasmic	237	242	0.69
Transmembrane Helix	243	265	0.82
Non-Cytoplasmic	266	288	0.73
Transmembrane Helix	289	304	0.48
Cytoplasmic	305	310	0.45
Transmembrane Helix	311	343	0.75
Non-Cytoplasmic	344	351	0.56
Transmembrane Helix	352	372	0.92
Cytoplasmic	373	377	0.58
Transmembrane Helix	378	400	0.78
Non-Cytoplasmic	401	405	0.54
Transmembrane Helix	406	424	0.80
Cytoplasmic	425	596	0.94
Transmembrane Helix	597	617	0.81
Non-Cytoplasmic	618	621	0.76
Transmembrane Helix	622	641	0.92
Cytoplasmic	642	648	0.76
Transmembrane Helix	649	668	0.91
Non-Cytoplasmic	669	674	0.77
Transmembrane Helix	675	698	0.89
Cytoplasmic	699	705	0.72
Transmembrane Helix	706	728	0.84
Non-Cytoplasmic	729	772	0.69
Transmembrane Helix	773	803	0.75
Cytoplasmic	804	811	0.47
Transmembrane Helix	812	835	0.89
Non-Cytoplasmic	836	840	0.42
Transmembrane Helix	841	863	0.85
Cytoplasmic	864	868	0.37
Transmembrane Helix	869	891	0.64
Non-Cytoplasmic	892	929	0.40

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDHPLKEMS DNNRSPPLPE PLSSRYKLYE SELSSPTWPS SSQDTHPALP LLEMPEEKDL  60
   61 RSSDEDSHIV KIEKPNERSK RRESELPRRA SAGRGAFSLF QAVSYLTGDM KECKNWLKDK 120
  121 PLVLQFLDWV LRGAAQVMFV NNPLSGLIIF IGLLIQNPWW TIAGALGTVV STLAALALSQ 180
  181 DRSAIASGLH GYNGMLVGLL VAVFSEKLDY YWWLLFPVTF ASMACPVISS ALSTVFAKWD 240
  241 LPVFTLPFNI ALTLYLAATG HYNLFFPTTL VKPASSAPNI TWSEIEMPLL LQTIPVGVGQ 300
  301 VYGCDNPWTG GVILVALFIS SPLICLHAAI GSIVGLLAAL TVATPFETIY TGLWSYNCVL 360
  361 SCVAIGGMFY VLTWQTHLLA LVCALFCAYT GAALSNMMAV VGVPPGTWAF CLSTLTFLLL 420
  421 TSNNPGIHKL PLSKVTYPEA NRIYFLTAKR SDEQKPPNGG GGEQSHGGGQ RKAEEGSETV 480
  481 FPRRKSVFHI EWSSIRRRSK VFGKSEHQER QTKEPLPYLY RKPTVELLDL NTMEESSEIK 540
  541 VETNTTRTTW IQSSMIAGGK RVSKALSYIT GEMKECGEGL KDKSPVFQFL DWVLRGTSQV 600
  601 MFVNNPLSGI LIVLGLFVQN PWWAISGCLG TIMSTLTALI LSQDKSAIAA GLHGYNGVLV 660
  661 GLLMAVFSDK GNYYWWLLLP VIVMSMTCPI LSSALSTVFS KWDLPVFTLP FNIAVTLYLA 720
  721 ATGHYNLFFP TKLLQPAVTT PNITWSDVQV PLLLRAIPVG IGQVYGCDNP WTGGIFLVAL 780
  781 FVSSPLICLH AAIGSTIGML AALSIATPFD SIYFGLCGFN STLACIAIGG MFYVITWQTH 840
  841 LLAIACALFA AYLGAALANM LSVFGLPPCT WPFCLSALTF LLLTTNNPGI YKLPLSKVTY 900
  901 PEANRIYFLS QEKNRRASMI TKYQAYDVS