YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AMGO2_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.87
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLRFHTLPT LPRAVKPGCR ELLCLLVIAV MVSPSASGMC PTACICATDI VSCTNKNLSK  60
   61 VPGNLFRLIK RLDLSYNRIG LLDADWIPVS FVKLSTLILR HNNITSISTG SFSTTPNLKC 120
  121 LDLSSNRLKS VKSATFQELK ALEVLLLYNN HISYLDPAAF GGLSHLQKLY LSGNFLTQFP 180
  181 MDLYTGRFKL ADLTFLDVSY NRIPSIPMHH INLVPGRQLR GIYLHGNPFV CDCSLYSLLI 240
  241 FWYRRHFSSV MDFKNDYTCR LWSDSRHSHQ LQLLQESFLN CSYSVINGSF HALGFIHEAQ 300
  301 VGERAIVHCD SKTGNGNTDF IWVGPDNRLL EPDKDMGNFR VFYNGSLVIE NPGFEDAGVY 360
  361 SCIAMNRQRL LNETVDIMIN VSNFTINRSH AHEAFNTAFT TLAACVASIV LVLLYLYLTP 420
  421 CPCKCKAKRQ KNTLSQSSAH SSILSPGPTG DASADDRKAG KRVVFLEPLK DTAAGQNGKV 480
  481 KLFPSETVIA EGILKSTRAK SDSDSVNSVF SDTPFVAST

Type	Start	End	Confidence
Signal Peptide	1	38	0.99
N-region	1	29
H-region	30	35
C-region	36	38
Cleavage Site	38	39
Non-Cytoplasmic	39	397	0.98
Transmembrane Helix	398	419	0.83
Cytoplasmic	420	519	0.84