YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NETO1_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIYGRSLFHI IASLIILHSS GATKKGTEKQ ITPETQKSVQ CGTWTKHAEG GVFTSPNYPS  60
   61 KYPPDRECVY IIEAAPRQCI ELYFDEKYSI EPSWECKFDH IEVRDGPFGF SPIIGRFCGQ 120
  121 QNPPVIKSSG RFLWIKFFAD GELESMGFSA RYNFTPDPDF KDLGVLKPLP ACEFEMGGPE 180
  181 GIVESIQILK EGKASASEAV DCKWYIRAPP RSKIYLRFLD YEMQNSNECK RNFVAVYDGS 240
  241 SSVEDLKAKF CSTVANDVML RTGLGVIRMW ADEGSRNSRF QMLFTSFQEP PCEGNTFFCH 300
  301 SNMCINNTLV CNGLQNCVYP WDENHCKEKR KTSLLDQLTN TSGTVIGVTS CIVIILIIVS 360
  361 VIVQIKQPRK KYVQRKSDFD QTVFQEVFEP PHYELCTLRG TGATADFADV AEDFENYHKL 420
  421 RRSSSKCIHD HHCGSQLSSA KGSRSNLSTR DASILAEIPT QPVKPLIPPV NRRNILVMKH 480
  481 NYSQDAADAC DIDEIEEVPT TSHRLSRHEK SVQRFCLIGS LSKHESEYNT TRV

Type	Start	End	Confidence
Signal Peptide	1	22	0.94
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	342	0.99
Transmembrane Helix	343	365	0.90
Cytoplasmic	366	533	0.96