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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|28972688
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HIHIVEELLK CGANLEHRDM GGWTALMWAC YKGRTDVVEL LLSHGANPSV TGLYSVYPII  60
   61 WAAGRGHADI VHLLLQNGAK VNCSDKYGTT PLVWAARKGH LECVKHLLAM GADVDQEGAN 120
  121 SMTALIVAVK GGYTQSVKEI LKRNPNVNLT DKDGNTALMI ASKEGHIEIV QDLLDAGTYV 180
  181 NIPDRSGDTV LIGAVRGGHV EIVRALLQKY ADIDIRGQDN KTALYWAVEK GNATMVRDIL 240
  241 QCNPDTEICT KDGETPLIKA TKMRNIEVVE LLLDKGARVS AVDKKGDTPL HVAIRGRSRR 300
  301 LAELLLRNPK DGRLLYRPNK AGETPYNIDC SHQKSILTQI FGARHLSPTE TDGDMLGYDL 360
  361 YSSALADILS EPTMQPPICV GLYAQWGSGK SFLLKKLEDE MKTFAGQQIE PLFQFSWLIV 420
  421 FLTLLLCGGL GLVFAFTVDT NLAIAVSLSF LALLYIFFIV IYFGGRQEGE SWNWAWALST 480
  481 RLARHIGYLE LLFKLMFVNP PELPEQTTKA LPVRFLFTDY NRLSSVGGET SLAEMIFEYL 540
  541 RLKILRVKRN GKKTCCLPSF IIFLFIVGCI IAGITLLAIF RVDPKHLTVN AILISIASIV 600
  601 GLAFVLNCRT WWQVLDSLLN SQRKRLHSAA SKLHKLKSEG FMKVLKCEVE LMARMAKTID 660
  661 SFTQNQTRLV VIIDGLDACE QDKVLQMLDT VRVLFSKGPF IAIFASDPHI IIKAINQNLN 720
  721 SVLRDSNING HDYMRNIVHL PVFLNSRGLS NARKFLVTSA TNGDISCSEA TGVQEDADRR 780
  781 VSQNSLGEMT KLGSKTALNR RDTYRRRQMQ RTITRQMSFD LTKLLVTEDW FSDISPQTMR 840
  841 RLLNIVSVTG RLLRANQITF NWDRLASWIN LTEQWPYRTS WLILYLEETE GLPDQMTLKT 900
  901 IYERISKNIP TTKDVEPLLE IDGDIRNFEV FLSSRTPVLV ARDVKTFLPC TVNLDPKLRE 960
  961 IIADVRAARE QINIGGLAYP PLPLHEAPPR PPSGYSQPAS VCSSSASFNG PFPGGVVSPQ1020
 1021 PHSSYYSGLS GPQHPFYNRP FFAPYLYTPR YYPGGSQHLI SRSSVKTSLP RDQNNGLEVI1080
 1081 KEDAAEGLPS PTASSREKSW TRKQLMELCD SGFNKQRQAS VPATGTSLLL SSMTVDVVCE1140
 1141 KLRQIEGLDQ GMLPQYCTTI KKANINGRVL AQCNIDELKK EMAMNFGDWH LFRSMVLEMR1200
 1201 SVENQVVPED PRFLNENSSA PVAHGESARR TSHSELPHTE LSSQTPYTLN FSFEELNTLG1260
 1261 LDEGAPRHSN LSWQSQTRRT PSLSSLNSQD SSIEISKLTD KVQAEYRDAY REYIAQMSQL1320
 1321 EGGTGSSTIS GRSSPHSTYY IGQSSSGGSI HSNLEQERGK ESELKQEEGR KSFLMKRGDV1380
 1381 LDYSSSGVST NEASPLDPIT EEDEKSDQSG SKLLPGKKSS ERPSLFQTDL KLKGSGLRYQ1440
 1441 KLPSDEDESG TEESDNTPLL KDDKDKKAEG KAERVAKSPE HSVEPIRTFI KAKEYLSDAL1500
 1501 LDKKDSSDSG VRSNESSPNH SLHNEAADDS QLEKANLIEL EDEGHSGKRG MPHSLSGLQD1560
 1561 PVIARMSICS EDKKSPSECS LIASSPEESW PSCQKAYNLN RTPSTVTLNN NTAPTNRANQ1620
 1621 NFDEIEGVRE TSQVILRPGP SPNPTAVQNE NLKSMAHKRS QRSSYTRLSK DASELHAASS1680
 1681 DSTGFGEERE SIL

YRC Informatics Platform - Version 3.0
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