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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SORC1_MOUSE
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKVGAGDGS SAGLSALLAG AGLLMLLAPG VCSSLSCCPP QHPSSTPRRT LTPRGFPHPG  60
   61 PLGRAPATPP PLFMRPLFAV APGDRALFLE RAGGSRVSVA TAARSGRRRR SGTEPEKIEP 120
  121 GEGASRSRRD MLKDGGQQGL GTGARDPGKA TRFRMEELRL TSTTFALTGD SAHNQAMVHW 180
  181 SGHNSSVILI LTKLYDYNLG SITESSLWRS TDYGTTYEKL NDKVGLKTIL SYLYVCPTNK 240
  241 CKIMLLTDPE IESSLLISSD EGATYQKYRL NFYLQSLLFH PKQEDWILAY SQDQKLYSSA 300
  301 EFGRRWQLIQ ESVVPNRFYW SVMGSSKEPD LVHLEARTVD GHSIYLTCRM QNCTEANRNK 360
  361 PFPGYIDPDS LIVQDDYVFV QLTSGGRPHY YVSYRRSPFA QMKLPKYALP KDMHVISTDE 420
  421 NQVFAAVQEW NQNDTYNLYI SDTRGVYFTL ALENVRSSRG PEGNVMIDLY EVAGIKGMFL 480
  481 ANKKIDNQVK TFITYNKGRD WRLLQAPDAD LRGDPVHCLL PYCSLHLHLK VSENPYTSGI 540
  541 IASRDTAPSI IVASGNIGSE LSDSDISMFV SSDAGNTWRQ IFEEEHSILY LDQGGVLVAM 600
  601 KHTSLPIRHL WLSFDEGRSW SKYSFTSIPL FVDGVLGEPG EETLIMTVFG HFSHRSEWQL 660
  661 VKVDYKSIFD RRCAEEDYRP WQLHSQGEAC IMGAKRIYKK RKSERKCMQK YAGAMESEPC 720
  721 VCTEADFDCD YGYERHSNGQ CLPAFWFNPS SLSKDCSLGQ SYLNSAGYRK VVSNNCTDGV 780
  781 REQYTAKPQK CPGKAPRGLR IVTADGKLTA EQGHNVTLMV QLEEGDVQRT LIQVDFGDGI 840
  841 AVSYVNLSSM EDGIKHVYQN VGIFRVTVQV DNSLGSDSAV LYLHVTCPLE HVHLSLPFVT 900
  901 TKNKEVNATA VLWPSQVGTL TYVWWYGNNT EPLITLEGSI SFKFTSEGMN TITVQVSAGN 960
  961 AILQDTKTIA VYEEFRSLRL AFSPNLDDYN PDIPEWRRDI SRVIKKSLVE ATGIPSQHIL1020
 1021 VAVLPGLPTA AELFVLPYQD GTRENKRSPE DLEQISEVLI HKLNQNLVHF ELKPGVQVLV1080
 1081 HAAHLTAAPL VDLTPTHSGS AMLMLLSVVF VGLAVFVIYK FKRRVALPSP PSPSAQPGDS1140
 1141 SLRLQRPRPA TPPSSPKRGS AGAQFAI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle