YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG6006-PC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	216	0.69
Transmembrane Helix	217	236	0.73
Cytoplasmic	237	243	0.84
Transmembrane Helix	244	263	0.93
Non-Cytoplasmic	264	269	0.78
Transmembrane Helix	270	292	0.89
Cytoplasmic	293	302	0.81
Transmembrane Helix	303	324	0.90
Non-Cytoplasmic	325	330	0.79
Transmembrane Helix	331	349	0.93
Cytoplasmic	350	409	0.95
Transmembrane Helix	410	429	0.95
Non-Cytoplasmic	430	438	0.82
Transmembrane Helix	439	461	0.90
Cytoplasmic	462	467	0.90
Transmembrane Helix	468	489	0.92
Non-Cytoplasmic	490	497	0.72
Transmembrane Helix	498	519	0.80
Cytoplasmic	520	529	0.71
Transmembrane Helix	530	551	0.90
Non-Cytoplasmic	552	557	0.78
Transmembrane Helix	558	578	0.93
Cytoplasmic	579	603	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKRKSLTHD SPSMELELPL LAPQERSQRS RSGTIPLCIM HDSAKQSPTT SPTIPPKQQA  60
   61 ATPQSPAAAV SGLDPADDED ETDVIGDLMG HYGKWQLLMT VLLSLFQVPN TFHISSSIYQ 120
  121 AANKDFWCQR PAQLQHMPVA TWRNLSGSVD NCRRWEGIDW SQVSNETTLP SDWKTPAEMD 180
  181 KKLVACEKWE YETNDNVGNT WTSQWDLVCE KEHLKNVAEM FFLLGVATGG IISGYLSDKF 240
  241 GRKTMLFISA VLQTIFGLWL YICSSFELYL TLRALLGLVS VSVTYSGLIL AIEYVDGKWR 300
  301 TIAGMYNLFP LPISYMIISG LAYLTQDYQR LQLCIGIPGI FLCFLWFVVP ESPRWLLVKG 360
  361 RIDEVRRIIE AAAKFNGRQL PADYQLTPPT QESSTQDVTY LFRSSYLRRI SICFFCIWFT 420
  421 MNLVYYGIIL NMSSFGGNVY LNSALAGLVE IPAIAVAMYI ITKVGKKWLF CATLICAGVA 480
  481 CCCAAITEGH ADLLWLKITF LMMGKFTISA GNTIMPVYTA ELYPTPIRNV GVGACNVAAG 540
  541 LALILTPYLS LLNKIEGHLL MTLLTAWSIF GGFVVLFLPE TAVRQKTDNQ GGSSANASAA 600
  601 KQV