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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PGCV_MOUSE, CSPG...
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLINMKGILW MCSTLLLTHA LHQAKMETSP PVKGSLSGKV VLPCHFSTLP TLPPNYNTSE  60
   61 FLRIKWSKME VDKNGKDIKE TTVLVAQNGN IKIGQDYKGR VSVPTHPDDV GDASLTMVKL 120
  121 RASDAAVYRC DVMYGIEDTQ DTMSLAVDGV VFHYRAATSR YTLNFAAAQQ ACLDIGAVIA 180
  181 SPEQLFAAYE DGFEQCDAGW LSDQTVRYPI RAPREGCYGD MMGKEGVRTY GFRSPQETYD 240
  241 VYCYVDHLDG DVFHITAPSK FTFEEAEAEC TSRDARLATV GELQAAWRNG FDQCDYGWLS 300
  301 DASVRHPVTV ARAQCGGGLL GVRTLYRFEN QTCFPLPDSR FDAYCFKPKQ NISEATTIEM 360
  361 NILAETSSPS LSKEPHMVPD RATPVIPLAT ELPIFTTHFP PAGNIVNSEQ KSVVYSQAIT 420
  421 GRLATESPTT TRNTINSWDL NDSLASGSGP LGMPDISEIK EEELRSTTVI SQHATGSQAV 480
  481 ITEDTQTHES VSQIEQIEVG PLVTSMEITN HISLKELPEK NKTPYESTEV TLEHTTEMPT 540
  541 VSASPELATT SHYGFTLRED DREDRTLTVR SDQSTRVFSQ IPEVITVSKT SEDTTYSQLG 600
  601 DLESISTSTI TMLGTDRSLI DKEKEPKTNG KVTEDEFGQS QPTTTFPSQH LTEVELLPYS 660
  661 GDTTSVEGIS TVIYPSLQTD VTQGRERTET PRPELKKDPY TVDEIPEKVT KDPFIGKTEE 720
  721 VFSGMPLSTS SSESSVERTE SVSPALTIEK LTGKPTEARD VEEMTTLTRL ETDVTKSDKD 780
  781 VTRVHLTHST LNVEVVTVSK WPGDEDNSTS KPLPSTEHAG FTKLPPVPLS TIGINGKDKE 840
  841 IPSFTDGGGE YTLFPDGTPK PLEKVSEEDL ASGELTVTFH TSTSIGSAEK SASGEPTTGD 900
  901 RFLPTTSTED QVINATAEGS ALGEDTEASK PLFTGPPFVH TSDVEELAFV NYSSTQEPTT 960
  961 YVDISHTSPL SIIPKTEWSV LETSVPLEDE ILGKSDQDIL EQTHLEATMS PGALRTTGVS1020
 1021 QGETQEEPQT PGSPFPTFSS TAVMAKETTA FEEGEGSTYT PSEGRLMTGS ERVPGLETTP1080
 1081 VGTSYPPGAI TDQEVEMDTM VTLMSTIRPT VVSSTESEVI YEAEGSSPTE FASTLRPFQT1140
 1141 HVTQLMEETT EEGKKASLDY TDLGSGLFEP RATELPKFPS TPSDISVFTA IDSLHRTPPL1200
 1201 SPSSSFTEEQ RVFEEESSEK TTGDILPGES VTQHPVTTLI DIVAMKTESD IDHMTSKPPV1260
 1261 TQPTRPSVVE RKTTSKTQEL STSTPAAGTK FHPDINVYII EVRENKTGRR LSDMIVSGHP1320
 1321 IDSESKEEEP CSEETDPLHD LFAEILPELP DSFEIDIYHS EEDEDGEEDC VNATDVTTTP1380
 1381 SVQYINGKQL VTTVPKDPEA AEARRGQYES VAPSQNFPDS SATDTHQFIL AETESSTTMQ1440
 1441 FKKSKEGTEL LEITWKPETY PETPDHVSSG EPDVFPTLSS HDGKTTRWSE SITESSPNLE1500
 1501 NPVHKQPKPV PLFPEESSGE GAIEQASQET ILSRATEVAL GKETDQSPTL STSSILSSSV1560
 1561 SVNVLEEEPL TLTGISQTDE SMSTIESWVE ITPSQTVKFS ESSSAPIIEG SGEVEENKNK1620
 1621 IFNMVTDLPQ RDPTDTLSPL DMSKIMITNH HIYIPATIAP LDSKLPSPDA RPTTVWNSNS1680
 1681 TSEWVSDKSF EGRKKKENED EEGAVNAAHQ GEVRAATERS DHLLLTPELE SSNVDASSDL1740
 1741 ATWEGFILET TPTESEKEMA NSTPVFRETI GVANVEAQPF EHSSSSHPRV QEELTTLSGN1800
 1801 PPSLFTDLGS GDASTGMELI TASLFTLDLE SETKVKKELP STPSPSVEIS SSFEPTGLTP1860
 1861 STVLDIEIAG VMSQTSQKTL ISEISGKPTS QSGVRDLYTG FPMGEDFSGD FSEYPTVSYP1920
 1921 TMKEETVGMG GSDDERVRDT QTSSSIPTTS DNIYPVPDSK GPDSTVASTT AFPWEEVMSS1980
 1981 AEGSGEQLAS VRSSVGPVLP LAVDIFSGTE SPYFDEEFEE VAAVTEANER PTVLPTAASG2040
 2041 NTVDLTENGY IEVNSTMSLD FPQTMEPSKL WSKPEVNLDK QEIGRETVTK EKAQGQKTFE2100
 2101 SLHSSFAPEQ TILETQSLIE TEFQTSDYSM LTTLKTYITN KEVEEEGMSI AHMSTPGPGI2160
 2161 KDLESYTTHP EAPGKSHSFS ATALVTESGA ARSVLMDSST QEEESIKLFQ KGVKLTNKES2220
 2221 NADLSFSGLG SGGALPPLPT TSVNLTDMKQ IISTLYAETS HMESLGTSIL GDKMEDHERM2280
 2281 EDVSSNEVRM LISKIGSISQ DSTEALDTTL SHTGTEEPTT STLPFVKLMD LERSPKQDPS2340
 2341 GGKRKPKTHR PQTMSGLISN ENSSASEAEE GATSPTAFLP QTYSVEMTKH FAPSESQPSD2400
 2401 LFNVNSGEGS GEVDTLDLVY TSGTTQASSQ GDSMLASHGF LEKHPEVSKT EAGATDVSPT2460
 2461 ASAMFLHHSE YKSSLYPTST LPSTEPYKSP SEGIEDGLQD NIQFEGSTLK PSRRKTTESI2520
 2521 IIDLDKEDSK DLGLTITESA IVKSLPELTS DKNIIIDIDH TKPVYEYIPG IQTDLDPEIK2580
 2581 LESHGSSEES LQVQEKYEGA VTLSPTEESF EGSGDALLAG YTQAIYNESV TPNDGKQAED2640
 2641 ISFSFATGIP VSSTETELHT FFPTASTLHI PSKLTTASPE IDKPNIEAIS LDDIFESSTL2700
 2701 SDGQAIADQS EVISTLGHLE KTQEEYEEKK YGGPSFQPEF FSGVGEVLTD PPAYVSIGST2760
 2761 YLIAQTLTEL PNVVRPSDST HYTEATPEVS SLAELSPQIP SSPFPVYVDN GVSKFPEVPH2820
 2821 TSAQPVSTVT SSQKSIESPF KEVHANIEET IKPLGGNVHR TEPPSMSRDP ALDVSEDESK2880
 2881 HKLLEELETS PTKPETSQDF PNKAKDHIPG ETVGMLAGIR TTESEPVITA DDMELGGATQ2940
 2941 QPHSASAAFR VETGMVPQPI QQEPERPTFP SLEINHETHT SLFGESILAT SEKQVSQKIL3000
 3001 DNSNQATVSS TLDLHTAHAL SPFSILDNSN ETAFLIGISE ESVEGTAVYL PGPDLCKTNP3060
 3061 CLNGGTCYPT ETSYVCTCAP GYSGDQCELD FDECHSNPCR NGATCVDGFN TFRCLCLPSY3120
 3121 VGALCEQDTE TCDYGWHKFQ GQCYKYFAHR RTWDAAEREC RLQGAHLTSI LSHEEQMFVN3180
 3181 RVGHDYQWIG LNDKMFEHDF RWTDGSALQY ENWRPNQPDS FFSAGEDCVV IIWHENGQWN3240
 3241 DVPCNYHLTY TCKKGTVACG QPPVVENAKT FGKMKPRYEI NSLIRYHCKD GFIQRHLPTI3300
 3301 RCLGNGRWAM PKITCMNPSA YQRTYSKKYL KNSSSAKDNS INTSKHEHRW SRRQETRR

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