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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SCNNB_MOUSE
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVKKYLLKC LHRLQKGPGY TYKELLVWYC NNTNTHGPKR IICEGPKKKA MWFLLTLLFA  60
   61 CLVCWQWGVF IQTYLSWEVS VSLSMGFKTM NFPAVTVCNS SPFQYSKVKH LLKDLDELME 120
  121 AVLEKILAPE ASHSNTTRTL NFTIWNHTPL VLIDERNPDH PVVLNLFGDS HNSSNPAPGS 180
  181 TCNAQGCKVA MRLCSANGTV CTLRNFTSAT QAVTEWYILQ ATNIFSQVLP QDLVGMGYAP 240
  241 DRIILACLFG TEPCSHRNFT PIFYPDYGNC YIFNWGMTEE TLPSANPGTE FGLKLILDIG 300
  301 QEDYVPFLAS TAGARLMLHE QRTYPFIREE GIYAMAGTET SIGVLVDKLQ RKGEPYSPCT 360
  361 MNGSDVAIKN LYSVYNTTYS IQACLHSCFQ DHMIRNCSCG HYLYPLPEGE KYCNNRDFPD 420
  421 WAYCYLNLQM SVTQRETCLS MCKESCNDTQ YKMTISMADW PSEASEDWIL HVLSQERDQS 480
  481 SNITLSRKGI VKLNIYFQEF NYRTIEESPA NNIVWLLSNL GGQFGFWMGG SVLCLIEFGE 540
  541 IIIDFIWITI IKLVASCKGL RRRRPQAPYT GPPPTVAELV EAHTNFGFQP DTTSCRPHGE 600
  601 VYPDQQTLPI PGTPPPNYDS LRLQPLDTME SDSEVEAI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle