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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|123704646, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.64
Topology Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVCTSVSCVW IIFCLHLCFY VNTGIAQNTR EVILLDSKAQ QTELEWISSP PSGWEEISGL  60
   61 DENYTPIRTY QVCQVMEPNQ NNWLRTNWIE KGDAQRIFVE LKFTLRDCNS LPGVVGSCKE 120
  121 TFNLYYQETD VEVGRNIRES QYVKIDTIAA DESFTQGDLG ERKMKLNTEV RIIGPLSRRG 180
  181 FYLAFQDVGA CIALVSVKVY YKKCWSIIEN LATFPDTVTG SEFSSLVEVE GTCVNDAEEE 240
  241 ADNSPKMHCS AEGEWLVPIG KCICKAGFHQ KGDACEPCGR GFYKSSSQDL QCSRCPAHSY 300
  301 NDREGSWRCD CEDGYYRALS DPPSVSCTRP PSAPQNLLYN INHTTVSLEW TPPADTGGRN 360
  361 DVTYRIICRR CTWEPEECFP CGSNVGYSPQ QSGLTDTYVT ITDLLAHANY TFEVEAVNGV 420
  421 SDLSRTQRLF AAVSIATSQA GSTFFTNISV HFYTSADMFE VTAPSQVSEV IKERVQQHSV 480
  481 QLSWQEPDQP NGVITEYEIK YYEKDQKDRI YSTVKSKSTS ATVNNLKPST AYVFQIRAFT 540
  541 AAGYGIFGPR LEVTTKEEST GSATVISSEQ NPVIIIAVVA VAGTIILVFM VFGFIIGRRH 600
  601 CGYSKADQEG DEELYFQFKF PGTKTYIDPE TYEDPNRAVH QFAKELDASC IKIERVIGAG 660
  661 EFGEVCSGRL KLPGKRDVSV AIKTLKVGYT EKQRRDFLCE ASIMGQFDHP NVVHLEGVVT 720
  721 RGKPVMIVIE YMENGSLDAF LRKHDGQFTV IQLVGMLRGI AAGMRYLSDM GYVHRDLAAR 780
  781 NILVNSNLVC KVSDFGLSRV IDDDPEAVYT TTGGKIPVRW TAMEAIQYRK FTSASDVWSY 840
  841 GIVMWEVMSY GERPYWDMSN QDVIKAIEEG YRLPAPMDCP PGLHQLMLDC WQKDRADRPK 900
  901 FDQIVGILDK MIRNPNTLKT PMGTCLRPIS PLLDQNTPDF TSFRLVSEWL EAIKMERYMD 960
  961 NFTAAGYSSL ESVARMTIED VMSLGISLVG HQKKIMSSIQ TMRAQMLHLH GTGVQV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle