YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S38A3_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	68	0.92
Transmembrane Helix	69	89	0.82
Non-Cytoplasmic	90	94	0.62
Transmembrane Helix	95	117	0.88
Cytoplasmic	118	141	0.67
Transmembrane Helix	142	163	0.76
Non-Cytoplasmic	164	182	0.70
Transmembrane Helix	183	205	0.86
Cytoplasmic	206	210	0.60
Transmembrane Helix	211	232	0.90
Non-Cytoplasmic	233	287	0.70
Transmembrane Helix	288	307	0.68
Cytoplasmic	308	324	0.85
Transmembrane Helix	325	346	0.90
Non-Cytoplasmic	347	366	0.91
Transmembrane Helix	367	387	0.95
Cytoplasmic	388	404	0.90
Transmembrane Helix	405	426	0.92
Non-Cytoplasmic	427	431	0.77
Transmembrane Helix	432	454	0.92
Cytoplasmic	455	469	0.91
Transmembrane Helix	470	492	0.94
Non-Cytoplasmic	493	505	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIPRQTEMV ELVPNGKHLE GLLPVGVPTT DTQRTEDTQH CGEGKGFLQK SPSKEPHFTD  60
   61 FEGKTSFGMS VFNLSNAIMG SGILGLAYAM ANTGIILFLF LLTAVALLSS YSIHLLLKSS 120
  121 GIVGIRAYEQ LGYRAFGTPG KLAAALAITL QNIGAMSSYL YIIKSELPLV IQTFLNLEKP 180
  181 ASVWYMDGNY LVILVSVTII LPLALMRQLG YLGYSSGFSL SCMVFFLIAV IYKKFQVPCP 240
  241 LAHNLANATG NFSHMVVAEE KAQLQGEPDT AAEAFCTPSY FTLNSQTAYT IPIMAFAFVC 300
  301 HPEVLPIYTE LKDPSKRKMQ HISNLSIAVM YVMYFLAALF GYLTFYDGVE SELLHTYSKV 360
  361 DPFDVLILCV RVAVLIAVTL TVPIVLFPVR RAIQQMLFQN QEFSWLRHVL IATGLLTCIN 420
  421 LLVIFAPNIL GIFGIIGATS APCLIFIFPA IFYFRIMPTD KEPARSTPKI LALCFAAVGF 480
  481 LLMTMSLSFI IIDWVSGTSQ HGGNH