YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|168693601, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	91	0.98
Transmembrane Helix	92	116	0.87
Cytoplasmic	117	127	0.88
Transmembrane Helix	128	149	0.94
Non-Cytoplasmic	150	167	0.85
Transmembrane Helix	168	187	0.92
Cytoplasmic	188	206	0.84
Transmembrane Helix	207	228	0.92
Non-Cytoplasmic	229	256	0.95
Transmembrane Helix	257	280	0.91
Cytoplasmic	281	299	0.92
Transmembrane Helix	300	323	0.91
Non-Cytoplasmic	324	337	0.91
Transmembrane Helix	338	361	0.88
Cytoplasmic	362	413	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRVLLVTGL LALNGSASAL PNNETFIRSF SGFFLTVTDE PFDYLDVQEG GSGFSSGQEP  60
   61 TLRKEHLHPP AKKTYHISQE ASSFLTGRVA TAVIPTIYII VFIISAPLNL LALVMFARKV 120
  121 RPKKPAAIYM MNLACADLLF VLLLPFRIAY NYNGNNWIYG AGMCRVVTAA FYCNMYCSVL 180
  181 LIMCISVDRF LAVVYPMDSL TWRSPQTATV TCAAMWLLSV GGVTPLLISN QTIHLPDLGI 240
  241 TTCHDVLDIQ LLREYYLYFF PIFCSLFFFI PLIFSTVCYL RIIQALCAAN VENRAKKTRA 300
  301 VIMAVTVFAV FVICFTPTNI ILLSHYVRFA YKHNDASYAA YLVSMCMGSI SCCLDPLIYY 360
  361 FGSSQCQKQV LAFLRCQGVP GIERSAQFTS STRSSNLETL KSSVNSQYIK LMA