YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157886399, gi...
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTRSEREKA QKLNEQHQAI LSKMLREDDN KYCADCEAKG PRWASWNLGV FICIRCAGIH  60
   61 RNLGVHISRV KSVNLDQWTP EQIQSVQSMG NTKARQLYEA HLPENFRRPQ TDQAVEFFIR 120
  121 DKYERKKYYD KNSVNGAIKS SDAALPSVSS PSSQAAEKSK LEKEREKKKE EKKREKDTDK 180
  181 ENKPAVLEKK REDNQIDSRI SPKKSAEPAI DLLGLDAPTV GSASSGAGTS SAAPISDDLD 240
  241 IFGPMVSNPL PSNSNSSQVS SSKAAGSAQA SSAGGAVAGA TGTGSAAPAQ GDLDLFSETS 300
  301 GNSKAEDSAK KPLSKDSILS LYGSSTVPQQ PAQATAMFMG PSQMQFPAQP QGNFQAFPGM 360
  361 GGAMPPTTMM GAVMGQGGAM MGQNTGMMVG MTMPNGFMGN AQPGVMGLAP GMMGPQGMVP 420
  421 PQNMYAMQPG QQGQWNMAQI NQQMSGMNLN GSGAPMAFGQ PGAPMGGWVA PPSGQTLSTQ 480
  481 LWK

Type	Start	End	Confidence
Non-Cytoplasmic	1	355	0.77
Transmembrane Helix	356	378	0.66
Cytoplasmic	379	395	0.48
Transmembrane Helix	396	414	0.56
Non-Cytoplasmic	415	456	0.68
Transmembrane Helix	457	472	0.45
Cytoplasmic	473	483	0.48