YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169146080, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.16
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	92	0.93
Transmembrane Helix	93	112	0.55
Non-Cytoplasmic	113	129	0.56
Transmembrane Helix	130	150	0.91
Cytoplasmic	151	158	0.50
Transmembrane Helix	159	178	0.84
Non-Cytoplasmic	179	216	0.58
Transmembrane Helix	217	239	0.89
Cytoplasmic	240	286	0.86
Transmembrane Helix	287	310	0.73
Non-Cytoplasmic	311	326	0.91
Transmembrane Helix	327	348	0.94
Cytoplasmic	349	485	0.98
Transmembrane Helix	486	507	0.94
Non-Cytoplasmic	508	513	0.87
Transmembrane Helix	514	534	0.89
Cytoplasmic	535	543	0.80
Transmembrane Helix	544	567	0.76
Non-Cytoplasmic	568	571	0.55
Transmembrane Helix	572	591	0.58
Cytoplasmic	592	611	0.69
Transmembrane Helix	612	634	0.89
Non-Cytoplasmic	635	651	0.70
Transmembrane Helix	652	671	0.48
Cytoplasmic	672	686	0.43
Transmembrane Helix	687	711	0.75
Non-Cytoplasmic	712	1127	0.56
Transmembrane Helix	1128	1142	0.16
Cytoplasmic	1143	1153	0.50
Transmembrane Helix	1154	1174	0.84
Non-Cytoplasmic	1175	1223	0.65
Transmembrane Helix	1224	1244	0.90
Cytoplasmic	1245	1366	0.86
Transmembrane Helix	1367	1389	0.94
Non-Cytoplasmic	1390	1444	0.73
Transmembrane Helix	1445	1466	0.86
Cytoplasmic	1467	1476	0.67
Transmembrane Helix	1477	1497	0.92
Non-Cytoplasmic	1498	1567	0.47
Transmembrane Helix	1568	1587	0.92
Cytoplasmic	1588	1655	0.73
Transmembrane Helix	1656	1680	0.90
Non-Cytoplasmic	1681	2312	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARFEDDLPT RYGGGGGGSP AGPGRGATRQ PGPPGGPRVY KQTMAQRART MAIYNPIPVK  60
   61 QNCLTVNRSL FIFSEDNIIR KYAKKITECP FEYMILATII ANCIVLGLEQ HLPALDKTPM 120
  121 SKRLDDTEPY FIGIFCFEAG IKIIALGFAF HKGSYLRNGW NVMDFVVVLT GILTIVGPDF 180
  181 DLRTLRAVRV LRPLKLVSGI PSLQVVLKSI MKAMVPLLQI GLLLFFAILM FAIIGLDFYM 240
  241 GKFHRTCFRT DTGEQVDEFP CGLESPAWTC ENGTECREYW IGPNFGITNF DNILFAVLTV 300
  301 FQCITMEGWV DILYNANDAS GNTWNWLYFI PLIIIGSFFM LNLVLGVLSG EFAKERERVE 360
  361 KRQEFLKLRR QQQIERELTG YLEWICKAEE VMLAEEDKNA EDKDDVAWYK RKCNNPVLKR 420
  421 AKKSKNDLIN AEEGEDHFTD ISSVAPQGSP FTRTSVKSSK IESLSYFRRK EKRFRFFIRR 480
  481 MVKAQSFYWT VLCIVGLNTL CVAIVHYDQP EWLTYALYLA EFVFLGLFLI EMSLKMYGLG 540
  541 PRTYFHSSFN CFDFGVIVGS IFEVIWAAVK PGASFGISVL RALRLLRIFK VTKYWNSLRN 600
  601 LVVSLLNSMK SIISLLFLLF LFIVVFALLG MQLFGGQFNF EDETPTTNFD TFPAAILTVF 660
  661 QILTGEDWNA VMYHGIESQG GVHRGMFCSV YFIVLTLFGN YTLLNVFLAI AVDNLANAQE 720
  721 LTKDEEEQEE AISKKLALQK AKEVKEVSPM SAANISITAF IRPNPGALSC SSSNSSSHSP 780
  781 KEQQRSLKMM SVWEQRTTQI RKHMLASSEA LYQEELNPRL MSNLPLRTDI KTHLDRPLVV 840
  841 EPRCDGPISP HSGWDKPQDL QGEGSTPEER VPPVFEPPQS HPPRKHHRHR ERLSNETNEN 900
  901 GDTGHAKEGR HHVHHSRSKE HDGTRCKEGK GDRSRSREGG RRHHHQSSVD EGVGGGEREH 960
  961 RHHHSHRHNR EGNGVVSAGG KSERRSRQKE GSRSGTREGE RCSRGENGGN GGRRRHRPRT1020
 1021 SKAQSTLEGE EQHVNGEEEG KHMDMGGDSM AVNPHQPSVG SRWCLEKPED SDNKRNIGQT1080
 1081 GGMSTHIPVT VTSPPGETTL IPMNSIDSET VPMTEKNLED LNQSSIRPIL PFSSMFIFNP1140
 1141 TNPVRRLCHY IVSLRYFEMC ILVVIAMSSI ALAAEDPVQA NAPRNNVLKY LDYVFTGVFT1200
 1201 FEMVIKMVDL GLILHPGSYF RDLWNILDFI VVSGALVAFA FSGTKGKDIS TIKSLRVLRV1260
 1261 LRPLKTIKRL PKLKLFKGKF FYCTDESKGL EKDCRGLFLD YDKDDVTAQP REWKKYEFHY1320
 1321 DNVLWAFLTL FTVSTGEGWP TVLKHSVDAT FEDQGPSPGY RIEMSIFYVV YFVVFPFFFV1380
 1381 NIFVALIIIT FQEQGDKVLS ECSLEKNERA CIDFAINAKP LTRYMPQNQQ SFQYRLWKFV1440
 1441 VSPPFEYSIM IMIALNTVVL MMKFHGAPDF YEAMLKYLNI VFTVLFSLEC ILKIIAFGPL1500
 1501 NYLKDAWNVF DFVTVLGSIT DILVTEINER QLNFSFLRLF RAARLIKLLR QGYTIRILLW1560
 1561 TFVQSFKALP YVCLLIAMLF FIYAIIGMQV FGNIDLNDDT AINRHNNFRT FLQALMLLFR1620
 1621 SATGEAWHDI MLSCLSERTC DPSSGTLGKE CGSDFAYFYF VSFIFLCSFL MLNLFVAVIM1680
 1681 DNFEYLTRDS SILGPHHLDE FIRVWAEYDP AACGRIKYLD MYEMLLHMSP PLGLGKKCPP1740
 1741 RIAYKRLVKM NMPIADDNSV HFTSTLMALI RTALEIKLAS GMVAQRLSDA ELKKELSTVW1800
 1801 PNLSQKTMDL LVTPHKPNEL TVGKVYAALM IFDYYKQNRA KRLQMQQQQL KEQAGPGSQN1860
 1861 KVSALLEPIL PLTHMQDQPV NGVDSASECQ AQTRPSSTTL NNGRTTLDNT IKGSSSWASE1920
 1921 KSKEVQKSKR RPMSRGQSED ASNANTAQES VEMRKMENSA NTVTSGGLEG QGRAASMPKL1980
 1981 NAEMQRSHSR QSPGTLLEPI PDSPMRRSAS TFAPQRPHEV NLNDYILEKP VQERHHHHHH2040
 2041 HHRCHHRRDR DKKQRSLDRS PTGHHKTTGT ATDSVEERAH DRGRSHERKH HSSSGEKQRY2100
 2101 YSCDRYASRE HCSSKSAVAS CATSPSETQE ANLNKQGSGW AKGSPVLLTS GASTPSRGRR2160
 2161 QLPQTPLTPR PSVAYRTANS SPVQLLATTT SLLPPSPGRL SRGLSEHNAL LLSGSISSSP2220
 2221 APVSRINSEP FLGPPDHPAG LQPEAFAVFQ ENPSPQMGRS PQTVGMPFVA IPPPPPQQFR2280
 2281 RVPNGYHFST GPSASRGRAQ QYYPEAEVED WC