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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: MSBA2_COLP3
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQVSKTIAK PSGNANLYSR LFSYYRVYKK LIFIALAGLC LFSFVDAGMI YFVKPLIDQG  60
   61 LSKADSHTLQ LGALLVVAIF FLRGIASFTS SYAIAYISSK VTYRIRQQAF DKLLYLPRTY 120
  121 FDLNSRGSLI SKIIYDTEQL SQSFSSAVVI AIRESVIILV LFSMMVYNSW QLTAIFLVIV 180
  181 PIIALIINKV SKRFKNISHK LQNSMGQVSN KTEQAILNQQ EIVLLDTRTQ ISAQFEKTNN 240
  241 NNRQQNMKLQ ATSAISNPVI QLIASFAIAA VLLLASIDQV LNQLTPGSFT LILIAMGSLL 300
  301 KPLKQLSNIN QQLQKGLIAA KSLFSFLDQQ EEHDIGTKQL SKTCSNIRFN NFSFTYQGKT 360
  361 QPALSNFSLQ IKGGTSVAFV GESGSGKSTL ARLLLRLYQS PKQSILINDI AIEDYSLSSL 420
  421 RAQFAFVSQD IVLIDDTLAN NISFGCNRDV TDSEIEQAAI NANVMAFAKE LPLGLNSEIG 480
  481 ENGRNLSGGQ RQRIAIARAM LRDASIIVLD EATSALDNHS EKHIQQALTR LTQHKTVLII 540
  541 AHKLSSIQHV DEIIVINKGR LIEQGNHKTL QAKAGYYQSL YQSQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle