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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|121949804
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPLFLVLSY LGQVIAAGKD VETPLLQITV PEKIDTNIQD AKEAETQVTY VVRIEGKAYT  60
   61 LQLEKQSFLH PLFGTYLRDK LGTLQPYFSL VKTHCFYQGH AAEIPVSTVT LSTCSGLRGL 120
  121 LQLENITYGI EPLESSATFE HILYEIKNNK IDYSPLKENF ANSEQESQSY RILVKPEKGS 180
  181 NSTLTKRILR IKIIMDKAMF DHMGSEVGVA TQKVVHIFGL INTMFSQLKM TVMLNSLEIW 240
  241 SEQDKIETNG DADEVLQRFL LWKSKEISQK AQDITYLLLY KDHPDYVGAT YHGMACNPNF 300
  301 TAGIALHPKT LAVEGFAIVL SQLLGINLGL AYDDVYNCFC PGSTCIMNPS AIRSQGIKVF 360
  361 SSCSVDEFKQ LASQPELDCL RNTSETEFVV QPQGGSYCGN HLLEVPEQCD CGPPETCTHK 420
  421 KCCNPKDCTL IDAAQCGTGP CCDKRTCTIA ERGRLCRKSK DQCDFPEFCN GETEGCAPDT 480
  481 KAADLEPCNN ETAYCFGGVC RDPDRQCTDL FGKYAKGPNY VCAQEVNLQN DKFGNCHGRC 540
  541 NYSAIFCGKA VCYWNFAEVI QTEKYDVQYT YLGGQVCVSA HLRSQTGTRD DTYVHDGTVC 600
  601 GSGQVCFRGD CLRVHVLRGT RECEADDKCQ GHGICNNLNN CQCESGFAPP ECDMTPSSPG 660
  661 GSMDDGFWLP FDKSTPLIFK RHGLKYKKVL LISFYILLPF LVVLAFMAVK RMIGKRLAKQ 720
  721 NISKALEHKE EAFNRGSMNP GVVSGGNTDQ NLMTVPGSFN SYAYHGNTDQ NFMTVPGSFN 780
  781 SYSYHGNTDQ NFMTVPGSFN SYSYQDVPYY RSIPEDGNDS QQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle