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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|20873290, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.98
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSRNWSWAL VWASVALLMV WPAESQGQAE LSSEHLELTG DSQRVYSDSI SSSTRHVTFV  60
   61 PPITVFPSMS ALHLAHNGRV CSTWGDFHYK TFDGDVFRFP GLCNYVFSSH CGATYEDFNI 120
  121 QLRRGLEGSR PTVTYVLLRA QGLVIELSNG SVLVNGHREK LPYSRAGLLM EKSSGYVKIS 180
  181 IRLVLTFLWN EEDSALLELD SKYINQTCGL CGDFNGLPAV SEFYTHNTRL TPVQFGNLQK 240
  241 LDGPTEQCQD VLPSAVSNCT DTEDICRRTL LGPAFDKCTA LVDVSMYLDA CVQDLCRCPT 300
  301 CPCATFAEYS RQCAHAGGYP QNWRHPDLCN WTCPFNMEYR ECSSPCVDTC SNPQRSQLCE 360
  361 DHCMDGCFCP PGTVLDDVRH LGCLPLEQCH CTHGGRIYAP GESFNTSCRS CTCFGGLWKC 420
  421 KDLPCPGTCS VQGGSHIFTF DEKLYNVHGD CSYILTKKCA DSSFTELVDL RKCGVTDTEN 480
  481 CLKAVTLNLN SGDTVIRIQV NGAVFLNSIF TQMPLSAGNI TIFKPSSFFI IVQTGMGLQL 540
  541 QVQLVPLMQV FVRLDRSYQG QMCGLCGNFN QNQADDFTAL SGVVEGTGAA FSNTWKTQAS 600
  601 CPNSKNTYED PCSYSVENEN FAREWCSMLT ESSGVFSACH ATVSPVPFYS NCLFDTCNCE 660
  661 NSEDCMCAAL SSYVFACAAK GVLLSGWRDK VCYKYTNNCP QTKGYFYSVS SCQPTCRSLS 720
  721 EADVTCSVPF VTVDGCTCPE GTFLNDKDHC VPVEECPCYF HGTVVAPREV VTDNGVVCSC 780
  781 TNGKLTCLGA LMQKSTECQA PMVYLDCNNA SVGHHGAECL KSCHTLDVEC FSTQCVSGCV 840
  841 CPSGLVADGN GGCIAEEDCP CIHNEVTYRP GEIIRVDCNN CTCKNRRWEC TNKPCMGACV 900
  901 AYGDGHFVTF DGERYIFEGS CEYTLAQDYC RGNTSTNGTF RIVTENVPCG TTGTTCSKTI 960
  961 KIFVESYELI LHEGNFKVVE QGPSGDPPYK IRFMGIFLVI EIRSGIVVSW DRKTSVFVRL1020
 1021 QQHYKGRVCG LCGNFDDNAI NDFTTRSQSV VGDVLEFGNS WKFSPSCPDA PVPKDPCIAN1080
 1081 PYRKSWAQKK CSIINSATFA ACHSQVDSTK YYEACVHDVC ACDSGGDCEC FCTAVAAYAQ1140
 1141 ACRDVGVCLS WRTPDICPLF CDYYNPHGEC EWHYQPCGAP CLKTCRNPTG HCLVDLPGLE1200
 1201 GCYPQCPTSQ PFFNEDQMKC VAQCGCYDDN GNYHDIGTQV PTAENCQSCL CTPGGLQCVY1260
 1261 NLTACTCTYE GRTYNYNDVV YNTTDGLGAC LVAICKDNGT IARTTEVRHE VPSTTPFTFT1320
 1321 TTLAPLATNG SASTVSTVCV HEVCQWSIWY DESHPEAGMS GGDFETFENL RKKGHQVCQT1380
 1381 PVGIECRAVK FPSMDLEKLG QKVNCDPSSG LSCFNSEQSP PLCHDYELRV LCCDYVPCGS1440
 1441 SLTLGISTTP SQPDTSRRPS SPTLTTHTAS SESQSWTREE KKTSVDKSYS SRQTVPFTSN1500
 1501 SRLTSTSMSS ASSLPLSNPT WTTTLKATDE NTMLSSRTTA VFTSQTRSTS RPSTVTQPIS1560
 1561 SPETSSTTCQ PQCQWTKWID VDYPSSSING GDIETYENIR ANGEKICEKP QDIRCMAQNH1620
 1621 PGVNVDELGQ KVKCDVSSGL VCYNKDQGGT FQMCYNYLIK VLCCSVSHCQ GSTTPEGSVS1680
 1681 TTETATSTPQ TLSSKPLPNT SSFETWSPSG PTTSMEASEM PTFWTLRTSV SSPPTTPLTV1740
 1741 TSVSTQHPKS LESSGSPSVV TARSTSQGHS LPPSSPHTTN SLSATTSKAS LSSMTTISTS1800
 1801 LTTPGPSSPP HGGTTTHPVT TASTTRAVTE TLSSRPHTKT TSELPTVSSA SSTAGPGTQT1860
 1861 SSTTCQPQCQ WTKWIDVDYP SSSINGGDIE TYENIRANGE KICEKPQDIR CMAQNHPGVN1920
 1921 VDELGQKVKC DVSSGLVCYN KDQGGTFQMC YNYLIKVLCC SVSHCQGSTT PEGSVSTTET1980
 1981 ATSTPQTLSS KPLPNTSSFE TWSPSGPTTS MEASEMPTFW TLRTSVSSPP TTPLTVTSVS2040
 2041 TQHPKSLESS GSPSVVTARS TSQGYSLPPS SPHTTNSLSA TTSKASLSSM TTISTSLTTP2100
 2101 GPSSPPHGGT TTHPVTTAST TRAVTETLSS RPHTKTTSEL PTVSSASSTA GPGTQTFSTT2160
 2161 CQPQCQWTKW IDVDYPSSSI NGGDIETYEN IRANGEKICE KPQDIRCMAQ NYPGVNVDKL2220
 2221 GQKVKCDVSS GLVCYNKDQG GTFPMCYNYL IKVLCCSVSH CQGSTTPEGS VSTTETTTAT2280
 2281 PQTLSSKPLP NTSSIETWSP SGPTTSMEAS EMPTFWTLRT SVSSPPTTPL TVTSVSTQHP2340
 2341 KSLESSGSPS VVTARSTSPG HSQPPSSPYA TNSLSATTSK ASLSSMTTIS TSLTTPGPSS2400
 2401 PPHGGTTTHP VTTASTTRAV TETLSSRPHT KTTSELPTVS SVSSTAGPGT QTGSTSRPNT2460
 2461 VTQPASSPET SSTTCQPQCQ WTKWIDVDYP SSSINGGDIE TYENIRANGE KICEKPQDIR2520
 2521 CMAQNHPGVN VDELGQKVKC DVSSGLVCYN KDQGGTFQMC YNYLIKVLCC SVSHCQRSTT2580
 2581 PAGSAPTTGT APTATSGTAT HTSWPASSMP TSTTESPSSS GKTTILTTAS SLATGTPRET2640
 2641 QTSSLLTTGL SSALTTTGTT STGCKSQCTW TDWLDSDKPQ PGQFEGDIET YYHIQNKTGI2700
 2701 KICKKPVDIE CEAVLFPNIS FQKLGQEVVC NVDFGLICRN SKQSDNQICF NYHIRVLCCE2760
 2761 EDTSCISTTG LLSTTSTSAP GFPSTVSTST TSKLPSEEPI PSTSFTTQSR PSTPRTEKIV2820
 2821 SIATARTTGS FPVSSLSTFP ASPTSLLPTS EEPHSGKPST SSWTASSNVP STAKPTTSTG2880
 2881 RQFPRTKTTL WNSLPSSTPT MATRSIHPIS TTMTTKNPQT LVTSDISKSN SMLPSRPHIT2940
 2941 ASSVTSTSGS QISKSYSSTS LTTAGPSSPP HGGTTTHPVT TASTTRAVTE TLSSRPHTKT3000
 3001 TSELPTVSSV SSTAGPGTQT GSTSRPSIVT QPVSSPETSS TTCQPQCQWT RWINVDYPSS3060
 3061 SINGGDIETY ENIRANGEKI CEKPQDIRCM AQNYPGVNVD ELGQKVKCDV NSGLVCYNKD3120
 3121 QGGTFKMCYN YLIKVLCCSV SHCQGSTTPE GSVSTTETAS SIPQTLSSKP LPNTSSFETW3180
 3181 SPSGPTTSME ASEMPTFWTL RTSVSSPPTT PLTVTSVSTQ HPKSLESSGS PSVVTARSTS3240
 3241 QGHSLPPSSP HTTNSLSATT SKASLSSMTT ISTSLTTSEP SSPPHGGTTT HPVTAASTTR3300
 3301 AVTETLSSRP HTKTTSELPT VPSASSTAGP GTQTGSTSRP STVTQPASSP ETSSTTCQPQ3360
 3361 CQWTKWIDVD YPSSSINGGD IETYENIRTN GEKICEKPQD IRCMAQNHPG VNVDELGQKV3420
 3421 KCDVNSGLVC YNKDQGGTFQ MCYNYLIKVL CCSVSHCQGS TTTPGSAPMT GSATTATQTL3480
 3481 SSMPLPNTSL TVTSPHSAST TAATSITETS SPRSVSSIHT TPKIFPETLQ STTGLTTQQT3540
 3541 SSTGIWTSML TGTAGTVSST SLSTSLESTT GITEVSTSMP MTSTLPVTVT NATTPQGTTL3600
 3601 CQPKCKWTEW FDVDSPTSGS VKGDMETYEN IRASGKTLCQ APEKIECRAE NYPAVSIDKV3660
 3661 GQVVSCNLET GLVCKNEDQK DDFKMCFNYN IRVLCCDDYS HCPTTTYTTI KSPLAPFTTS3720
 3721 VSSSMESTFQ TNRPASPSGP STQASTWSTL PDSGCTPRCK WTEWFDADYP NPGPRGGDFE3780
 3781 VYAVFREVGY IFCDQPKDIE CRSEKEPDRP LETLEQVVQC DVRFGLICKN INQSGPLQYC3840
 3841 DNYHVRLLCC DNYSHCTSSP MATMSTALSS SHLPSTHTSL ALNTTTFFPG LSSSSEPHSS3900
 3901 SLMSTHTSTM LTTETSPIAT GPTVAPSSTS GTPYTPKVSP SSQVTFSVST AFSSVFSTPR3960
 3961 PVFSSHASSP SPCFCQAFGQ LFLPGDIIYN KTDGAGCQFY AICNQYCDVD RFQGTCPSSS4020
 4021 PPMSSTTVPL PPLLPGCDNA IPPRQVNESW TLENCTVARC QGNNQIILLE PEPVDNVTCA4080
 4081 NRHLPIKVWD QEPCHFHYEC ECFCSGWGHS HYLTFDGTSY TFLDNCTSVL MREIHPRHGN4140
 4141 LSILAHSYYC GATTNVTSCP RALGVYYNSM EIILTISTTE SGKDESLIIW DQMWIRSGFS4200
 4201 KNGVTVSLSG ATTMSVNIST IGTIITFDGD IFQIWLPYRY FSSNTEGQCG TCTNSQIDDC4260
 4261 RRPDGTIASD CQDMAKEWLV PGNSSSSCLA QPSPLPSTTP QTPVSSTLTS TPCPSAPLCE4320
 4321 LMLSQVFAEC HRLIPPDAFF RSCVSDHCNA NITDMLCQSL EAYAALCRAQ GVCTNWRNAT4380
 4381 GGLCDLSCPP TKEYRPCGPL HPASCNSRTQ DSTTGMLAEG CFCPENQLLF NSRMDICVSE4440
 4441 CPCVGPDGLP KFPGEHWISN CQACVCEPGS VSVQCEPVKC ESQDKPPQCT EAGFVTVTWP4500
 4501 SADNPCCPET LCVCNSTTCP KSLPTCEPGY ELVQTHENSS CCPSYSCRPK LCTYNDTIYG4560
 4561 VGTTFPGGPC HTCTCLSDGD QEPKVECKET NCTTSCPQGF KYTLVPEQCC GECLQNACLT4620
 4621 PEGHAVQPNE TWVNSPVDNC TAYHCMAENG VYVLTPIPTS CPDVSNCTGT LRKTGCCYSC4680
 4681 EKEDSSTCQV HVNATVLRYK GCETEVNITF CEGSCSGISK YSMEAQAMER QCTCCQESKV4740
 4741 HDVAVTMQCP DGTVIQHTYT HIDECNCAPA CSSLPGTSMI AS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle